This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

galaxy.tools.imp_exp package

class galaxy.tools.imp_exp.JobImportHistoryArchiveWrapper(app, job_id)[source]

Bases: object

Class provides support for performing jobs that import a history from an archive.

__init__(app, job_id)[source]
setup_job(jiha, archive_source, archive_type)[source]

Set history, datasets, collections and jobs’ attributes and clean up archive directory.

class galaxy.tools.imp_exp.JobExportHistoryArchiveWrapper(app, job_id)[source]

Bases: object

Class provides support for performing jobs that export a history to an archive.

__init__(app, job_id)[source]
setup_job(history, store_directory, include_hidden=False, include_deleted=False, compressed=True)[source]

Perform setup for job to export a history into an archive.


galaxy.tools.imp_exp.export_history module

Export a history to an archive file using attribute files.

usage: %prog history_attrs dataset_attrs job_attrs out_file

-G, –gzip: gzip archive file

galaxy.tools.imp_exp.export_history.create_archive(export_directory, out_file, gzip=False)[source]

Create archive from the given attribute/metadata files and save it to out_file.


galaxy.tools.imp_exp.unpack_tar_gz_archive module

Unpack a tar or tar.gz archive into a directory.

usage: %prog archive_source dest_dir

–[url|file] source type, either a URL or a file.

galaxy.tools.imp_exp.unpack_tar_gz_archive.check_archive(archive_file, dest_dir)[source]

Ensure that a tar archive has no absolute paths or relative paths outside the archive.

galaxy.tools.imp_exp.unpack_tar_gz_archive.unpack_archive(archive_file, dest_dir)[source]

Unpack a tar and/or gzipped archive into a destination directory.

galaxy.tools.imp_exp.unpack_tar_gz_archive.main(options, args)[source]