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galaxy.tool_util.client package¶
Submodules¶
galaxy.tool_util.client.staging module¶
Client for staging inputs for Galaxy Tools and Workflows.
Implement as a connector to serve a bridge between galactic_job_json utility and a Galaxy API library.
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class
galaxy.tool_util.client.staging.
InteractorStaging
(galaxy_interactor, use_fetch_api=True)[source]¶ Bases:
galaxy.tool_util.client.staging.StagingInterace
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use_fetch_api
¶
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class
galaxy.tool_util.client.staging.
StagingInterace
[source]¶ Bases:
object
Client that parses a job input and populates files into the Galaxy API.
Abstract class that must override _post (and optionally other things such _attach_file, _log, etc..) to adapt to bioblend (for Planemo) or using the tool test interactor infrastructure.
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stage
(tool_or_workflow, history_id, job=None, job_path=None, use_path_paste=True, to_posix_lines=True, job_dir='.')[source]¶
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use_fetch_api
¶ Return true is this should use (modern) data fetch API.
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