galaxy.tool_util.client package

Submodules

galaxy.tool_util.client.staging module

Client for staging inputs for Galaxy Tools and Workflows.

Implement as a connector to serve a bridge between galactic_job_json utility and a Galaxy API library.

class galaxy.tool_util.client.staging.StagingInterace

Bases: object

Client that parses a job input and populates files into the Galaxy API.

Abstract class that must override _post (and optionally other things such _attach_file, _log, etc..) to adapt to bioblend (for Planemo) or using the tool test interactor infrastructure.

stage(tool_or_workflow, history_id, job=None, job_path=None, use_path_paste=True, to_posix_lines=True)

abstract property use_fetch_api

Return true is this should use (modern) data fetch API.

class galaxy.tool_util.client.staging.InteractorStaging(galaxy_interactor, use_fetch_api=True)

Bases: galaxy.tool_util.client.staging.StagingInterace

__init__(galaxy_interactor, use_fetch_api=True)

Initialize self. See help(type(self)) for accurate signature.

property use_fetch_api

Return true is this should use (modern) data fetch API.