from ..base import common
from ..base.twilltestcase import ShedTwillTestCase
column_repository_name = "column_maker_0150"
column_repository_description = "Add column"
column_repository_long_description = "Compute an expression on every row"
convert_repository_name = "convert_chars_0150"
convert_repository_description = "Convert delimiters"
convert_repository_long_description = "Convert delimiters to tab"
category_name = "Test 0150 Simple Prior Installation"
category_description = "Test 0150 Simple Prior Installation"
"""
Create column_maker and convert_chars.
Column maker repository dependency:
<repository toolshed="self.url" name="convert_chars" owner="test" changeset_revision="c3041382815c" prior_installation_required="True" />
Verify display.
Galaxy side:
Install column_maker.
Verify that convert_chars was installed first, contrary to the ordering that would be present without prior_installation_required.
"""
[docs]class TestSimplePriorInstallation(ShedTwillTestCase):
"""Test features related to datatype converters."""
[docs] def test_0000_initiate_users(self):
"""Create necessary user accounts."""
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_create_convert_repository(self):
"""Create and populate convert_chars_0150."""
category = self.create_category(name=category_name, description=category_description)
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
repository = self.get_or_create_repository(
name=convert_repository_name,
description=convert_repository_description,
long_description=convert_repository_long_description,
owner=common.test_user_1_name,
category=category,
strings_displayed=[],
)
self.commit_tar_to_repository(
repository,
"convert_chars/convert_chars.tar",
commit_message="Uploaded convert_chars tarball.",
)
[docs] def test_0010_create_column_repository(self):
"""Create and populate convert_chars_0150."""
category = self.create_category(name=category_name, description=category_description)
repository = self.get_or_create_repository(
name=column_repository_name,
description=column_repository_description,
long_description=column_repository_long_description,
owner=common.test_user_1_name,
category=category,
strings_displayed=[],
)
self.commit_tar_to_repository(
repository,
"column_maker/column_maker.tar",
commit_message="Uploaded column_maker tarball.",
)
[docs] def test_0015_create_repository_dependency(self):
"""Create a repository dependency specifying convert_chars.
Column maker repository dependency:
<repository toolshed="self.url" name="convert_chars" owner="test" changeset_revision="<tip>" prior_installation_required="True" />
"""
column_repository = self._get_repository_by_name_and_owner(column_repository_name, common.test_user_1_name)
convert_repository = self._get_repository_by_name_and_owner(convert_repository_name, common.test_user_1_name)
dependency_xml_path = self.generate_temp_path("test_0150", additional_paths=["column"])
convert_tuple = (
self.url,
convert_repository.name,
convert_repository.owner,
self.get_repository_tip(convert_repository),
)
self.create_repository_dependency(
repository=column_repository,
repository_tuples=[convert_tuple],
filepath=dependency_xml_path,
prior_installation_required=True,
)
[docs] def test_0020_verify_repository_dependency(self):
"""Verify that the previously generated repositiory dependency displays correctly."""
column_repository = self._get_repository_by_name_and_owner(column_repository_name, common.test_user_1_name)
convert_repository = self._get_repository_by_name_and_owner(convert_repository_name, common.test_user_1_name)
self.check_repository_dependency(
repository=column_repository,
depends_on_repository=convert_repository,
depends_on_changeset_revision=None,
changeset_revision=None,
)