Source code for tool_shed.test.functional.test_0150_prior_installation_required

from ..base.twilltestcase import (
    common,
    ShedTwillTestCase,
)

column_repository_name = "column_maker_0150"
column_repository_description = "Add column"
column_repository_long_description = "Compute an expression on every row"

convert_repository_name = "convert_chars_0150"
convert_repository_description = "Convert delimiters"
convert_repository_long_description = "Convert delimiters to tab"

category_name = "Test 0150 Simple Prior Installation"
category_description = "Test 0150 Simple Prior Installation"

"""
Create column_maker and convert_chars.

Column maker repository dependency:
<repository toolshed="self.url" name="convert_chars" owner="test" changeset_revision="c3041382815c" prior_installation_required="True" />

Verify display.

Galaxy side:

Install column_maker.
Verify that convert_chars was installed first, contrary to the ordering that would be present without prior_installation_required.
"""


[docs]class TestSimplePriorInstallation(ShedTwillTestCase): """Test features related to datatype converters."""
[docs] def test_0000_initiate_users(self): """Create necessary user accounts.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) test_user_1 = self.test_db_util.get_user(common.test_user_1_email) assert ( test_user_1 is not None ), f"Problem retrieving user with email {common.test_user_1_email} from the database" self.test_db_util.get_private_role(test_user_1) self.login(email=common.admin_email, username=common.admin_username) admin_user = self.test_db_util.get_user(common.admin_email) assert admin_user is not None, f"Problem retrieving user with email {common.admin_email} from the database" self.test_db_util.get_private_role(admin_user)
[docs] def test_0005_create_convert_repository(self): """Create and populate convert_chars_0150.""" category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=convert_repository_name, description=convert_repository_description, long_description=convert_repository_long_description, owner=common.test_user_1_name, category_id=self.security.encode_id(category.id), strings_displayed=[], ) self.upload_file( repository, filename="convert_chars/convert_chars.tar", filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded convert_chars tarball.", strings_displayed=[], strings_not_displayed=[], )
[docs] def test_0010_create_column_repository(self): """Create and populate convert_chars_0150.""" category = self.create_category(name=category_name, description=category_description) repository = self.get_or_create_repository( name=column_repository_name, description=column_repository_description, long_description=column_repository_long_description, owner=common.test_user_1_name, category_id=self.security.encode_id(category.id), strings_displayed=[], ) self.upload_file( repository, filename="column_maker/column_maker.tar", filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded column_maker tarball.", strings_displayed=[], strings_not_displayed=[], )
[docs] def test_0015_create_repository_dependency(self): """Create a repository dependency specifying convert_chars. Column maker repository dependency: <repository toolshed="self.url" name="convert_chars" owner="test" changeset_revision="<tip>" prior_installation_required="True" /> """ column_repository = self.test_db_util.get_repository_by_name_and_owner( column_repository_name, common.test_user_1_name ) convert_repository = self.test_db_util.get_repository_by_name_and_owner( convert_repository_name, common.test_user_1_name ) dependency_xml_path = self.generate_temp_path("test_0150", additional_paths=["column"]) convert_tuple = ( self.url, convert_repository.name, convert_repository.user.username, self.get_repository_tip(convert_repository), ) self.create_repository_dependency( repository=column_repository, repository_tuples=[convert_tuple], filepath=dependency_xml_path, prior_installation_required=True, )
[docs] def test_0020_verify_repository_dependency(self): """Verify that the previously generated repositiory dependency displays correctly.""" column_repository = self.test_db_util.get_repository_by_name_and_owner( column_repository_name, common.test_user_1_name ) convert_repository = self.test_db_util.get_repository_by_name_and_owner( convert_repository_name, common.test_user_1_name ) self.check_repository_dependency( repository=column_repository, depends_on_repository=convert_repository, depends_on_changeset_revision=None, changeset_revision=None, )