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Source code for tool_shed.test.functional.test_0080_advanced_circular_dependencies

from ..base.twilltestcase import (
    common,
    ShedTwillTestCase,
)

column_repository_name = "column_maker_0080"
column_repository_description = "Add column"
column_repository_long_description = "Compute an expression on every row"

convert_repository_name = "convert_chars_0080"
convert_repository_description = "Convert delimiters"
convert_repository_long_description = "Convert delimiters to tab"

category_name = "Test 0080 Advanced Circular Dependencies"
category_description = "Test circular dependency features"


[docs]class TestRepositoryCircularDependencies(ShedTwillTestCase): """Verify that the code correctly handles circular dependencies."""
[docs] def test_0000_initiate_users(self): """Create necessary user accounts.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_create_column_repository(self): """Create and populate the column_maker repository.""" category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=column_repository_name, description=column_repository_description, long_description=column_repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) self.upload_file( repository, filename="column_maker/column_maker.tar", filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded column_maker tarball.", strings_displayed=[], strings_not_displayed=[], )
[docs] def test_0005_create_convert_repository(self): """Create and populate the convert_chars repository.""" self.login(email=common.admin_email, username=common.admin_username) category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=convert_repository_name, description=convert_repository_description, long_description=convert_repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) self.upload_file( repository, filename="convert_chars/convert_chars.tar", filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded convert_chars tarball.", strings_displayed=[], strings_not_displayed=[], )
[docs] def test_0020_create_repository_dependencies(self): """Upload a repository_dependencies.xml file that specifies the current revision of convert_chars_0080 to the column_maker_0080 repository.""" convert_repository = self.test_db_util.get_repository_by_name_and_owner( convert_repository_name, common.test_user_1_name ) column_repository = self.test_db_util.get_repository_by_name_and_owner( column_repository_name, common.test_user_1_name ) repository_dependencies_path = self.generate_temp_path("test_0080", additional_paths=["convert"]) repository_tuple = ( self.url, convert_repository.name, convert_repository.user.username, self.get_repository_tip(convert_repository), ) self.create_repository_dependency( repository=column_repository, repository_tuples=[repository_tuple], filepath=repository_dependencies_path )
[docs] def test_0025_create_dependency_on_filtering(self): """Upload a repository_dependencies.xml file that specifies the current revision of filtering to the freebayes_0040 repository.""" convert_repository = self.test_db_util.get_repository_by_name_and_owner( convert_repository_name, common.test_user_1_name ) column_repository = self.test_db_util.get_repository_by_name_and_owner( column_repository_name, common.test_user_1_name ) repository_dependencies_path = self.generate_temp_path("test_0080", additional_paths=["convert"]) repository_tuple = ( self.url, column_repository.name, column_repository.user.username, self.get_repository_tip(column_repository), ) self.create_repository_dependency( repository=convert_repository, repository_tuples=[repository_tuple], filepath=repository_dependencies_path )
[docs] def test_0030_verify_repository_dependencies(self): """Verify that each repository can depend on the other without causing an infinite loop.""" convert_repository = self.test_db_util.get_repository_by_name_and_owner( convert_repository_name, common.test_user_1_name ) column_repository = self.test_db_util.get_repository_by_name_and_owner( column_repository_name, common.test_user_1_name ) self.check_repository_dependency( convert_repository, column_repository, self.get_repository_tip(column_repository) ) self.check_repository_dependency( column_repository, convert_repository, self.get_repository_tip(convert_repository) )
[docs] def test_0035_verify_repository_metadata(self): """Verify that resetting the metadata does not change it.""" column_repository = self.test_db_util.get_repository_by_name_and_owner( column_repository_name, common.test_user_1_name ) convert_repository = self.test_db_util.get_repository_by_name_and_owner( convert_repository_name, common.test_user_1_name ) for repository in [column_repository, convert_repository]: self.verify_unchanged_repository_metadata(repository)