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Source code for galaxy.tool_util.deps.container_resolvers
"""The module defines the abstract interface for resolving container images for tool execution."""
from abc import (
ABCMeta,
abstractmethod,
)
from typing import (
Any,
Container,
Optional,
TYPE_CHECKING,
)
from galaxy.util.bunch import Bunch
from galaxy.util.dictifiable import Dictifiable
if TYPE_CHECKING:
from beaker.cache import Cache
from ..dependencies import (
AppInfo,
ToolInfo,
)
from ..requirements import ContainerDescription
[docs]class ResolutionCache(Bunch):
"""Simple cache for duplicated computation created once per set of requests (likely web request in Galaxy context).
This should not be assumed to be thread safe - resolution using a given cache should all occur
one resolution at a time in a single thread.
"""
mulled_resolution_cache: Optional["Cache"] = None
[docs]class ContainerResolver(Dictifiable, metaclass=ABCMeta):
"""Description of a technique for resolving container images for tool execution."""
# Keys for dictification.
dict_collection_visible_keys = ["resolver_type", "can_uninstall_dependencies", "builds_on_resolution"]
can_uninstall_dependencies = False
builds_on_resolution = False
read_only = True # not used for containers, but set for when they are used like dependency resolvers
[docs] def __init__(self, app_info: "AppInfo", **kwds) -> None:
"""Default initializer for ``ContainerResolver`` subclasses."""
self.app_info = app_info
self.resolver_kwds = kwds
def _get_config_option(self, key: str, default: Any = None) -> Any:
"""Look in resolver-specific settings for option and then fallback to
global settings.
"""
return getattr(self.app_info, key, default)
[docs] @abstractmethod
def resolve(
self, enabled_container_types: Container[str], tool_info: "ToolInfo", **kwds
) -> Optional["ContainerDescription"]:
"""Find a container matching all supplied requirements for tool.
The supplied argument is a :class:`galaxy.tool_util.deps.dependencies.ToolInfo` description
of the tool and its requirements.
"""
@property
@abstractmethod
def resolver_type(self) -> str:
"""Short label for the type of container resolution."""
def _container_type_enabled(
self, container_description: "ContainerDescription", enabled_container_types: Container[str]
) -> bool:
"""Return a boolean indicating if the specified container type is enabled."""
return container_description.type in enabled_container_types
def __str__(self) -> str:
return f"{self.__class__.__name__}[]"