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Source code for galaxy.tool_util.deps.container_resolvers

"""The module defines the abstract interface for resolving container images for tool execution."""
from abc import (

from galaxy.util.bunch import Bunch
from galaxy.util.dictifiable import Dictifiable

[docs]class ResolutionCache(Bunch): """Simple cache for duplicated computation created once per set of requests (likely web request in Galaxy context). This should not be assumed to be thread safe - resolution using a given cache should all occur one resolution at a time in a single thread. """
[docs]class ContainerResolver(Dictifiable, metaclass=ABCMeta): """Description of a technique for resolving container images for tool execution.""" # Keys for dictification. dict_collection_visible_keys = ['resolver_type', 'can_uninstall_dependencies', 'builds_on_resolution'] can_uninstall_dependencies = False builds_on_resolution = False read_only = True # not used for containers, but set for when they are used like dependency resolvers
[docs] def __init__(self, app_info=None, **kwds): """Default initializer for ``ContainerResolver`` subclasses.""" self.app_info = app_info self.resolver_kwds = kwds
def _get_config_option(self, key, default=None): """Look in resolver-specific settings for option and then fallback to global settings. """ if self.app_info and hasattr(self.app_info, key): return getattr(self.app_info, key) else: return default
[docs] @abstractmethod def resolve(self, enabled_container_types, tool_info, resolution_cache=None, **kwds): """Find a container matching all supplied requirements for tool. The supplied argument is a :class:`galaxy.tool_util.deps.containers.ToolInfo` description of the tool and its requirements. """
@abstractproperty def resolver_type(self): """Short label for the type of container resolution.""" def _container_type_enabled(self, container_description, enabled_container_types): """Return a boolean indicating if the specified container type is enabled.""" return container_description.type in enabled_container_types def __str__(self): return "%s[]" % self.__class__.__name__