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Source code for galaxy.model.dataset_collections.types.paired

from galaxy.model import (
    DatasetCollectionElement,
    HistoryDatasetAssociation,
)
from . import BaseDatasetCollectionType

FORWARD_IDENTIFIER = "forward"
REVERSE_IDENTIFIER = "reverse"


class PairedDatasetCollectionType(BaseDatasetCollectionType):
    """
    Paired (left/right) datasets.
    """

    collection_type = "paired"

    def generate_elements(self, elements):
        if forward_dataset := elements.get(FORWARD_IDENTIFIER):
            left_association = DatasetCollectionElement(
                element=forward_dataset,
                element_identifier=FORWARD_IDENTIFIER,
            )
            yield left_association
        if reverse_dataset := elements.get(REVERSE_IDENTIFIER):
            right_association = DatasetCollectionElement(
                element=reverse_dataset,
                element_identifier=REVERSE_IDENTIFIER,
            )
            yield right_association

    def prototype_elements(self):
        left_association = DatasetCollectionElement(
            element=HistoryDatasetAssociation(),
            element_identifier=FORWARD_IDENTIFIER,
        )
        right_association = DatasetCollectionElement(
            element=HistoryDatasetAssociation(),
            element_identifier=REVERSE_IDENTIFIER,
        )
        yield left_association
        yield right_association