Warning
This document is for an in-development version of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.
Source code for galaxy.files.sources.basespace
try:
from fs_basespace import BASESPACEFS
except ImportError:
BASESPACEFS = None
from typing import (
Optional,
Union,
)
from . import (
FilesSourceOptions,
FilesSourceProperties,
)
from ._pyfilesystem2 import PyFilesystem2FilesSource
[docs]class BaseSpaceFilesSource(PyFilesystem2FilesSource):
plugin_type = "basespace"
required_module = BASESPACEFS
required_package = "fs-basespace"
def _open_fs(self, user_context=None, opts: Optional[FilesSourceOptions] = None):
props = self._serialization_props(user_context)
extra_props: Union[FilesSourceProperties, dict] = opts.extra_props or {} if opts else {}
handle = BASESPACEFS(**{**props, **extra_props})
return handle
__all__ = ("BaseSpaceFilesSource",)