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Source code for galaxy.files.sources.basespace
try:
from fs_basespace import BASESPACEFS
except ImportError:
BASESPACEFS = None
from typing import (
Optional,
Union,
)
from . import (
FilesSourceOptions,
FilesSourceProperties,
)
from ._pyfilesystem2 import PyFilesystem2FilesSource
[docs]class BaseSpaceFilesSource(PyFilesystem2FilesSource):
plugin_type = "basespace"
required_module = BASESPACEFS
required_package = "fs-basespace"
def _open_fs(self, user_context=None, opts: Optional[FilesSourceOptions] = None):
props = self._serialization_props(user_context)
extra_props: Union[FilesSourceProperties, dict] = opts.extra_props or {} if opts else {}
handle = BASESPACEFS(**{**props, **extra_props})
return handle
__all__ = ("BaseSpaceFilesSource",)