Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

tool_shed.webapp.model.migrate.versions package

Submodules

tool_shed.webapp.model.migrate.versions.0001_initial_tables module

Migration script to create initial tables.

tool_shed.webapp.model.migrate.versions.0001_initial_tables.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0001_initial_tables.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0001_initial_tables.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0002_add_tool_suite_column module

Migration script to add the suite column to the tool table.

tool_shed.webapp.model.migrate.versions.0002_add_tool_suite_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0002_add_tool_suite_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0003_review_and_review_association_tables module

Adds the tool_rating_association table, enabling tools to be rated along with review comments.

tool_shed.webapp.model.migrate.versions.0003_review_and_review_association_tables.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0003_review_and_review_association_tables.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0003_review_and_review_association_tables.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0004_repository_tables module

Adds the repository, repository_rating_association and repository_category_association tables.

tool_shed.webapp.model.migrate.versions.0004_repository_tables.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0004_repository_tables.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0004_repository_tables.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0006_add_email_alerts_column module

Migration script to add the email_alerts column to the repository table.

tool_shed.webapp.model.migrate.versions.0006_add_email_alerts_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0006_add_email_alerts_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0007_add_long_description_times_downloaded_columns module

Migration script to add the long_description and times_downloaded columns to the repository table.

tool_shed.webapp.model.migrate.versions.0007_add_long_description_times_downloaded_columns.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0007_add_long_description_times_downloaded_columns.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0008_add_repository_metadata_table module

Migration script to add the repository_metadata table.

tool_shed.webapp.model.migrate.versions.0008_add_repository_metadata_table.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0008_add_repository_metadata_table.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0008_add_repository_metadata_table.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0009_add_malicious_column module

Migration script to add the malicious column to the repository_metadata table.

tool_shed.webapp.model.migrate.versions.0009_add_malicious_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0009_add_malicious_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0010_add_new_repo_alert_column module

Migration script to add the new_repo_alert column to the galaxy_user table.

tool_shed.webapp.model.migrate.versions.0010_add_new_repo_alert_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0010_add_new_repo_alert_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0011_add_tool_versions_column module

Migration script to add the tool_versions column to the repository_metadata table.

tool_shed.webapp.model.migrate.versions.0011_add_tool_versions_column.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0011_add_tool_versions_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0011_add_tool_versions_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0012_add_downloadable_column module

Migration script to add the downloadable column to the repository_metadata table.

tool_shed.webapp.model.migrate.versions.0012_add_downloadable_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0012_add_downloadable_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0013_add_review_tables module

Migration script to add the repository_review, component_review and component tables and the Repository Reviewer group and role.

tool_shed.webapp.model.migrate.versions.0013_add_review_tables.NOW()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0013_add_review_tables.nextval(migrate_engine, table, col='id')[source]
tool_shed.webapp.model.migrate.versions.0013_add_review_tables.localtimestamp(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0013_add_review_tables.boolean_false(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0013_add_review_tables.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0013_add_review_tables.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0014_add_deprecated_column module

Migration script to add the deprecated column to the repository table.

tool_shed.webapp.model.migrate.versions.0014_add_deprecated_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0014_add_deprecated_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0015_add_api_keys_table module

Migration script to add the api_keys table.

tool_shed.webapp.model.migrate.versions.0015_add_api_keys_table.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0015_add_api_keys_table.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0015_add_api_keys_table.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns module

Migration script to add the tool_test_errors, do_not_test, tools_functionally_correct, and time_last_tested columns to the repository_metadata table.

tool_shed.webapp.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0016_add_do_not_test_tools_functionally_correct_errors_columns.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table module

Migration script to add the includes_datatypes, has_repository_dependencies, includes_tools, includes_tool_dependencies and includes_workflows columns to the repository_metadata table.

tool_shed.webapp.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0017_add_galaxy_utility_columns_to_repository_metadata_table.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0018_add_repository_metadata_flag_columns module

Migration script to alter the repository_metadata table by dropping the tool_test_errors column and adding columns tool_test_results, missing_test_components.

tool_shed.webapp.model.migrate.versions.0018_add_repository_metadata_flag_columns.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0018_add_repository_metadata_flag_columns.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column module

Migration script to add the skip_tool_test table and add the test_install_error column to the repository_metadata table.

tool_shed.webapp.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0020_add_repository_type_column module

Migration script to add the type column to the repository table.

tool_shed.webapp.model.migrate.versions.0020_add_repository_type_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0020_add_repository_type_column.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0021_change_repository_type_value module

Migration script to change repository.type column value from generic to unrestricted.

tool_shed.webapp.model.migrate.versions.0021_change_repository_type_value.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0021_change_repository_type_value.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0022_add_repository_admin_roles module

Migration script to create the repository_role_association table, insert name-spaced repository administrative roles into the role table and associate each repository and owner with the appropriate name-spaced role.

tool_shed.webapp.model.migrate.versions.0022_add_repository_admin_roles.NOW()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0022_add_repository_admin_roles.nextval(migrate_engine, table, col='id')[source]
tool_shed.webapp.model.migrate.versions.0022_add_repository_admin_roles.localtimestamp(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0022_add_repository_admin_roles.boolean_false(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0022_add_repository_admin_roles.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0022_add_repository_admin_roles.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0023_add_repository_url_and_hompeage_url module

Migration script to add the remote_repository_url and homepage_url columns to the repository table.

tool_shed.webapp.model.migrate.versions.0023_add_repository_url_and_hompeage_url.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0023_add_repository_url_and_hompeage_url.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0024_password_reset module

Migration script for the password reset table

tool_shed.webapp.model.migrate.versions.0024_password_reset.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0024_password_reset.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0024_password_reset.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0025_session_timeout module

Migration script to add session update time (used for timeouts)

tool_shed.webapp.model.migrate.versions.0025_session_timeout.now()

Return a new datetime representing UTC day and time.

tool_shed.webapp.model.migrate.versions.0025_session_timeout.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0025_session_timeout.downgrade(migrate_engine)[source]

tool_shed.webapp.model.migrate.versions.0026_add_numeric_revision_column module

Migration script to add the numeric_revision column to the repository metadata table.

tool_shed.webapp.model.migrate.versions.0026_add_numeric_revision_column.upgrade(migrate_engine)[source]
tool_shed.webapp.model.migrate.versions.0026_add_numeric_revision_column.downgrade(migrate_engine)[source]