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Source code for galaxy.model.migrate.versions.0100_alter_tool_dependency_table_version_column

Migration script to alter the type of the tool_dependency.version column from TrimmedString(40) to Text.

import logging

from sqlalchemy import (

log = logging.getLogger(__name__)
metadata = MetaData()

[docs]def upgrade(migrate_engine): print(__doc__) metadata.bind = migrate_engine metadata.reflect() Table("tool_dependency", metadata, autoload=True) # Change the tool_dependency table's version column from TrimmedString to Text. if migrate_engine.name in ['postgres', 'postgresql']: cmd = "ALTER TABLE tool_dependency ALTER COLUMN version TYPE Text;" elif migrate_engine.name == 'mysql': cmd = "ALTER TABLE tool_dependency MODIFY COLUMN version Text;" else: # We don't have to do anything for sqlite tables. From the sqlite documentation at http://sqlite.org/datatype3.html: # 1.0 Storage Classes and Datatypes # Each value stored in an SQLite database (or manipulated by the database engine) has one of the following storage classes: # NULL. The value is a NULL value. # INTEGER. The value is a signed integer, stored in 1, 2, 3, 4, 6, or 8 bytes depending on the magnitude of the value. # REAL. The value is a floating point value, stored as an 8-byte IEEE floating point number. # TEXT. The value is a text string, stored using the database encoding (UTF-8, UTF-16BE or UTF-16LE). # BLOB. The value is a blob of data, stored exactly as it was input. cmd = None if cmd: try: migrate_engine.execute(cmd) except Exception: log.exception("Altering tool_dependency.version column from TrimmedString(40) to Text failed.")
[docs]def downgrade(migrate_engine): # Not necessary to change column type Text to TrimmedString(40). pass