Source code for galaxy.model.migrate.versions.0100_alter_tool_dependency_table_version_column

"""
Migration script to alter the type of the tool_dependency.version column from TrimmedString(40) to Text.
"""
from __future__ import print_function

import logging

from sqlalchemy import (
    MetaData,
    Table
)

log = logging.getLogger(__name__)
metadata = MetaData()


[docs]def upgrade(migrate_engine):
    print(__doc__)
    metadata.bind = migrate_engine
    metadata.reflect()

    Table("tool_dependency", metadata, autoload=True)
    # Change the tool_dependency table's version column from TrimmedString to Text.
    if migrate_engine.name in ['postgres', 'postgresql']:
        cmd = "ALTER TABLE tool_dependency ALTER COLUMN version TYPE Text;"
    elif migrate_engine.name == 'mysql':
        cmd = "ALTER TABLE tool_dependency MODIFY COLUMN version Text;"
    else:
        # We don't have to do anything for sqlite tables.  From the sqlite documentation at http://sqlite.org/datatype3.html:
        # 1.0 Storage Classes and Datatypes
        # Each value stored in an SQLite database (or manipulated by the database engine) has one of the following storage classes:
        # NULL. The value is a NULL value.
        # INTEGER. The value is a signed integer, stored in 1, 2, 3, 4, 6, or 8 bytes depending on the magnitude of the value.
        # REAL. The value is a floating point value, stored as an 8-byte IEEE floating point number.
        # TEXT. The value is a text string, stored using the database encoding (UTF-8, UTF-16BE or UTF-16LE).
        # BLOB. The value is a blob of data, stored exactly as it was input.
        cmd = None
    if cmd:
        try:
            migrate_engine.execute(cmd)
        except Exception:
            log.exception("Altering tool_dependency.version column from TrimmedString(40) to Text failed.")


[docs]def downgrade(migrate_engine):
    # Not necessary to change column type Text to TrimmedString(40).
    pass