21.05

Enhancements

• Beta History scrolling behavior and polling efficiency tuning Pull Request 11693

• Add FastAPI routes for tours Pull Request 11089

• Add FastAPI routes for datatypes (thanks to @davelopez). Pull Request 11098

• Add cache_dir to schema Pull Request 11202

• Allow requesting extra scopes (thanks to @hexylena). Pull Request 11561

• Github workflow for updating dependencies Pull Request 11570

• Allow line break html tag in markdown pages Pull Request 11592

• Allow workflow imports in pages Pull Request 11607

• Add option to download collections in markdown pages Pull Request 11676

• Add the SimText shiny app as Interactive Tool (thanks to @dlal-group). Pull Request 11680

• Replace sqlalchemy-utilities with local implementation Pull Request 11696

• Circus + Celery - MVP Pull Request 11720

• Support role and group permissions in file sources plugins (thanks to @davelopez). Pull Request 11769

• Add circus + gunicorn option when using run.sh Pull Request 11772

• Run history export setup via celery, if configured Pull Request 11789

• Allow importing histories through pages / reports Pull Request 11863

• Migrate api/genomes to fastapi Pull Request 11241

• Add FlowCytometry and MetaCyto datatypes (thanks to @pcm32). Pull Request 9807

• Add mrc datatype (and Python dependency) (thanks to @gregvonkuster). Pull Request 11220

• Add HHR datatype (thanks to @bgruening). Pull Request 11661

• add meryldb datatype (thanks to @bgruening). Pull Request 11694

• Add datatype for PretextMap output Pull Request 11747

• add new datatype class for meryldb (thanks to @bgruening). Pull Request 11758

• Add Avivator GEDA and sniffer for ome.tiff datatype (thanks to @qiagu). Pull Request 11801

• jellyfish db datatype (thanks to @astrovsky01). Pull Request 11802

• Add new datatype JPEG 2000 in Galaxy (thanks to @annefou). Pull Request 11812

• Adding h5_model datatype for machine leaning models (thanks to @qiagu). Pull Request 11825

• Add support for the Relion STAR data format (thanks to @gregvonkuster). Pull Request 11831

• Add minerva display app for covid (thanks to @hexylena). Pull Request 11880

• Add toml datatype (thanks to @jj-umn). Pull Request 11909

• grep, tail, head: add option to keep header (thanks to @bernt-matthias). Pull Request 11859

• add a bit of docs to the add tags tool (thanks to @bernt-matthias). Pull Request 11874

• Add failed-to-submit error handling for simplified workflow run form Pull Request 12124

• Selenium test case for invocation grid + display. Pull Request 11160

• be more verbose on output filter errors (thanks to @bernt-matthias). Pull Request 11197

• Add UpgradeAllSteps workflow refactor action (thanks to @simonbray). Pull Request 11429

• Guess tool name when extracting workflows with imported datasets (thanks to @davelopez). Pull Request 11483

• Avoid appending imported source on workflow name multiple times. (thanks to @davelopez). Pull Request 11671

• Switch default handler assignment to skip locked or transaction isolation if possible Pull Request 11792

• Client testing/linting updates and followup Pull Request 11121

• replaced global vue with test vue in unit tests Pull Request 11138

• Manage folder rewrite in Vue & VueRouter (thanks to @OlegZharkov). Pull Request 11259

• Copy to Clipboard button next to the tool id in job information (thanks to @OlegZharkov). Pull Request 11478

• Better webpack-dev-server handling. Pull Request 11566

• Speed up get history list Pull Request 11883

• Implement switch to history modal for beta history panel Pull Request 11895

• Store job_id on Dataset table. Pull Request 10222

• Handle unschedulable jobs in k8s runner (thanks to @almahmoud). Pull Request 10496

• Establish a best practice for trans dependency management. Pull Request 11113

• Adding GALAXY_MEMORY_MB_PER_SLOT to k8s runner (thanks to @almahmoud). Pull Request 11227

• add reworked chronos job runner (thanks to @mtangaro). Pull Request 11228

• Generalise rule helper to detect whether tools can use any container (thanks to @pcm32). Pull Request 11274

• Only return a subset of jobs ready to run per user when querying for jobs ready to run Pull Request 11358

• ITs on Kubernetes (thanks to @almahmoud). Pull Request 11383

• Read cgroups from cgroup filesystem mount rather than cgget, which is not always installed Pull Request 11393

• SLURM: stop editing job stderr file (thanks to @bernt-matthias). Pull Request 11575

• Fixes for extended metadata working with Pulsar. Pull Request 11788

• Fix collection state updates by setting collection update time Pull Request 11849

• Test a better Pulsar configuration for extended metadata. Pull Request 11852

• Add handler column in admin jobs, remove webcontroller Pull Request 11868

• improve three debug messages (thanks to @bernt-matthias). Pull Request 11908

• Add documentation on how to setup Pulsar’s two-container job runner Pull Request 11557

• sortable columns in Admin->Users (thanks to @OlegZharkov). Pull Request 11665

• Create install database with create_db.sh Pull Request 11753

• Include more info on test input staging exception Pull Request 11953

• Add indexes on update_time columns used in ORDER BY clauses Pull Request 11988

• Don’t assert output_metadata state Pull Request 12100

• Fix and enhance subworkflow step upgrade messages Pull Request 12120

• Performance testing infrastructure. Pull Request 10117

• Stub MQ docs (thanks to @brinkmanlab). Pull Request 10347

• Implement read-only conda resolver. Pull Request 10810

• really test variables in conditionals (thanks to @bernt-matthias). Pull Request 11111

• Updated API Design Guidelines Pull Request 11115

• uvicorn-compatible factory function for fastapi. Pull Request 11116

• Dynamic discovery of FastAPI routers. Pull Request 11124

• FastAPI routes for configuration Pull Request 11126

• Start type signature for UniverseApplication. Pull Request 11142

• Various testing framework cleanups. Pull Request 11156

• FastAPI routes for tool data tables (thanks to @davelopez). Pull Request 11167

• Recommend 2FA and commit signing (thanks to @nsoranzo). Pull Request 11173

• Warns that build_mulled_singularity requires docker (thanks to @pcm32). Pull Request 11176

• Documentation and helpers for using galaxy-selenium package within Jupyter Pull Request 11177

• History beta poll decay time reset Pull Request 11178

• Holistic approach to dependency injection. Pull Request 11180

• Selenium test for library_import_dir (thanks to @OlegZharkov). Pull Request 11188

• Replace pipenv with poetry. Update all dependencies (thanks to @nsoranzo). Pull Request 11192

• Add missing xml:lang attribute to documentation annotations (thanks to @davelopez). Pull Request 11198

• Selenium tests for user library import dir (thanks to @OlegZharkov). Pull Request 11203

• FastAPI route for remote files (thanks to @davelopez). Pull Request 11211

• More debug info for failed integration selenium tests during CI. Pull Request 11217

• Implement abstraction around InferringApiRouter tailored to typical Galaxy usage. Pull Request 11219

• FastAPI route for tags (Disabled) (thanks to @davelopez). Pull Request 11224

• Remove folder_up button from data folder (thanks to @OlegZharkov). Pull Request 11230

• add ActionChains example in documentation of galaxy-selenium package within Jupyter (thanks to @OlegZharkov). Pull Request 11232

• Sync x-frame-options handling across frameworks and test. Pull Request 11235

• FastAPI/ASGI CORS handling. Pull Request 11240

• FastAPI routes for Pages (Disabled) (thanks to @davelopez). Pull Request 11262

• Don’t fail silently in User.system_user_pwent() (thanks to @nsoranzo). Pull Request 11272

• Move docstring linting to GitHub workflows (thanks to @nsoranzo). Pull Request 11300

• Add Nuwan Goonasekera to the committers group Pull Request 11304

• ignore subdirectories if recurse is false (thanks to @bernt-matthias). Pull Request 11307

• Fix transiently failing roles API test. Pull Request 11319

• Allow GET /api/dataset_collections/{hdca_id} without specifying instance_type (thanks to @nsoranzo). Pull Request 11346

• Add support for Plausible analytics and Matomo analytics (thanks to @selten). Pull Request 11351

• Lint for optional or multiple selects with radio display (thanks to @bernt-matthias). Pull Request 11385

• Test library dataset permissions (thanks to @OlegZharkov). Pull Request 11402

• Use request id middleware to scope session Pull Request 11411

• Move unit tests to GitHub workflows, test also under Python 3.9 (thanks to @nsoranzo). Pull Request 11452

• Allow anonymous access to S3 buckets via file sources plugins. Pull Request 11458

• add copy tooldID btn (thanks to @OlegZharkov). Pull Request 11477

• Libraries rewrite (thanks to @OlegZharkov). Pull Request 11485

• adding nameSuggestion to PairCollectionCreator (thanks to @assuntad23). Pull Request 11489

• xsd: use validator as child of param (thanks to @bernt-matthias). Pull Request 11497

• add sshfs plugin to the new file infrastructure (thanks to @bgruening). Pull Request 11507

• add ftp files.plugin (thanks to @bgruening). Pull Request 11508

• Add ready-to-go gitpod config Pull Request 11509

• Create pull_request_template.md (thanks to @assuntad23). Pull Request 11530

• Add more filtering options to api/jobs endpoint (thanks to @rikeshi). Pull Request 11560

• Migrate metrics API to FastAPI (thanks to @davelopez). Pull Request 11568

• Sample conf for dropbox and owncloud file sources (thanks to @abretaud). Pull Request 11580

• An attempt to improve dependency management Pull Request 11619

• Overhaul make-based release process Pull Request 11641

• Pin fs.webdavfs requirement to latest version (thanks to @abretaud). Pull Request 11648

• Update all Python dependencies (thanks to @nsoranzo). Pull Request 11649

• update to cope with impending changes to cwltool internals (thanks to @rupertnash). Pull Request 11655

• Lint for duplicated options (thanks to @bernt-matthias). Pull Request 11662

• Single User Mode - Disable irrelevant and broken options Pull Request 11669

• Swap ‘Analyze Data’ to home icon Pull Request 11674

• Bugfix/11476/disabled upload button explanation (thanks to @assuntad23). Pull Request 11682

• Break up dynamic dataset collection into chunks Pull Request 11697

• enable the S3 plugin to use non-AWS resrouces (thanks to @bgruening). Pull Request 11703

• Implement selenium tests for exporting library datasets to history collections. (thanks to @OlegZharkov). Pull Request 11716

• lint for checkboxes select (thanks to @bernt-matthias). Pull Request 11727

• Refactor stdout/stderr in Job Information (thanks to @OlegZharkov). Pull Request 11731

• Copy collections dbkey (thanks to @assuntad23). Pull Request 11732

• Fix CI docs build for feature branches (thanks to @nsoranzo). Pull Request 11740

• Updated Code of Conduct to point to the exact copy of this CoC on the hub. Pull Request 11750

• Allow AWS s3 access for ec2 instances without hardcoding credentials (thanks to @crashGoBoom). Pull Request 11757

• Add an explicit statement of assent to licensing to the pull request template Pull Request 11777

• Fixes for installed Galaxy Pull Request 11779

• Update Python dependencies Pull Request 11782

• Handle deprecated postgresql db urls; update postgres version in ci Pull Request 11790

• Update localisation options to include Español (thanks to @hexylena). Pull Request 11791

• Open update deps PRs from galaxybot’s fork (thanks to @nsoranzo). Pull Request 11795

• Make k8s container 39 MB smaller by using vim-tiny (thanks to @rhpvorderman). Pull Request 11826

• Make tool parameter options capable of referring to metadata file (thanks to @qiagu). Pull Request 11832

• Restore triggers dropped in #10821 (thanks to @nsoranzo). Pull Request 11843

• Do not invoke workflow if not all tools are available (thanks to @simonbray). Pull Request 11844

• Improve error handling when creating a new History with the master API key (thanks to @davelopez). Pull Request 11846

• Expose StoredWorkflowId in invocation API (thanks to @simonbray). Pull Request 11871

• Create FastAPI entry points for Tool Shed and Reports (thanks to @davelopez). Pull Request 11872

• Rev mypy. Pull Request 11877

• Backport #11871 (thanks to @scholtalbers). Pull Request 11881

• Allow to filter /api/invocations by job_id (thanks to @scholtalbers). Pull Request 11882

• Complete Spanish language version (thanks to @nomadscientist). Pull Request 11891

• Add subpathing to k8s_persistent_volume_claims (thanks to @anvilproject). Pull Request 11899

• Make _metadata regular JSONType field Pull Request 11902

• Abstraction for fetching qualified app URL across webapp types Pull Request 11904

• Add delete account selenium test (thanks to @OlegZharkov). Pull Request 11905

• Update framework dependencies Pull Request 11907

• expose copied_from_ldda_id on dataset api endpoint (thanks to @scholtalbers). Pull Request 11922

• Fix remaining issues reported by bugbear; add it to flake8 reqs (thanks to @nsoranzo). Pull Request 11153

• Fix all E203, E741 and W504 flake8 errors (thanks to @nsoranzo). Pull Request 11155

• Remove unused TS methods. Pull Request 11179

• Remove some seemingly unused cruft in GalaxyWebTransaction Pull Request 11234

• Drop unused transfer_manager.py Pull Request 11238

• Get rid of legacy decorator in api/tours Pull Request 11253

• Update vscode dev instructions, drop helper script Pull Request 11258

• Replace $.isArray with Array prototype check Pull Request 11264

• Drop docker testing image Pull Request 11329

• Renamed virtualscroller since it is no longer virtual Pull Request 11331

• Dataset lib permissions Vue rewrite (thanks to @OlegZharkov). Pull Request 11347

• Refactor libraries API logic into LibrariesManager (thanks to @davelopez). Pull Request 11359

• Refactor display_applications API logic into DisplayApplicationsManager (thanks to @davelopez). Pull Request 11386

• Repair styleguide Pull Request 11404

• Refactor groups API logic into GroupsManager (thanks to @davelopez). Pull Request 11412

• Refactor group_roles API logic into GroupRolesManager (thanks to @davelopez). Pull Request 11417

• Refactor group_users API logic into GroupUsersManager (thanks to @davelopez). Pull Request 11418

• Pin mypy to 0.790 to prevent linting errors when running v 0.8 Pull Request 11422

• Use galaxy Router instead of InferringRouter (thanks to @davelopez). Pull Request 11591

• Front-end Library Routing refactor (thanks to @OlegZharkov). Pull Request 11614

• Remove unused TraceLogger class (thanks to @nsoranzo). Pull Request 11616

• Refactor library folder API logic into FoldersService (thanks to @davelopez). Pull Request 11631

• Rewrite Library Permissions (thanks to @OlegZharkov). Pull Request 11637

• Fix prop mutation in FolderTopBar (thanks to @OlegZharkov). Pull Request 11638

• Refactor library folder contents api (thanks to @davelopez). Pull Request 11686

• Update Python dependencies Pull Request 11702

• Partial refactor ShareableMixin into ShareableService (thanks to @davelopez). Pull Request 11712

• Incorporate changes from Pulsar’s copy of galaxy.jobs.runners.util Pull Request 11810

• Separate tests for “remote” and “remote + extended” metadata. Pull Request 11840

• Unify security decode id exceptions (thanks to @davelopez). Pull Request 11856

• Optimized beta history polling by leveraging history.update_time + loading behavior bug fixes Pull Request 11884

• Eslint tweaks Pull Request 11925

Fixes

• Shared visualization display fix Pull Request 11906

• remove duplicated qcml from datatypes_conf sample (thanks to @bernt-matthias). Pull Request 11378

• Limit max column in tabular dataset preview Pull Request 11901

• Use keep_original in pysam.tabix_index to not remove original data Pull Request 11913

• Open input file in read mode in liftover wrapper Pull Request 12001

• Resolve session problems, enabled pages and tags fastAPI routes Pull Request 11342

• Make filter work with file containing header (thanks to @bernt-matthias). Pull Request 11365

• Fix copying text in workflow editor Pull Request 12118

• Make failure to save workflow dismissible Pull Request 12122

• Allow trs_version to refer to name or id field Pull Request 12021

• Workflow editor null/zero fixes Pull Request 11265

• Fix reconnecting terminals Pull Request 11660

• Fix tags not included when importing shared workflow (thanks to @davelopez). Pull Request 11663

• Fix workflow rename dropping metadata. Pull Request 11670

• Use Modal to show wrong RuntimeValue Pull Request 11678

• Ensure new outputs have correct mapOver state Pull Request 11683

• Redraw connections when adding or removing inputs Pull Request 11684

• Fix displaying data column parameters in workflow editor Pull Request 11692

• Fix workflow refactor schema parsing for pydantic 1.8. Pull Request 11778

• fix undefined error in ui-file-source (thanks to @OlegZharkov). Pull Request 11586

• Remove filter from list:paired element names when filter is not _1 Pull Request 11486

• Beta history current history mismatch with legacy code. Pull Request 11850

• Reposition history scroller during new updates Pull Request 11879

• ITs on K8S tweaks and SSL (thanks to @almahmoud). Pull Request 11947

• Fix anonymous user job walltime query Pull Request 11951

• Fix container port parsing if IPv6 hostname is :: Pull Request 11955

• Fix isolated job home dir on pulsar Pull Request 12037

• Don’t start workflow scheduler for handler in job pool Pull Request 12075

• Fix set metadata for primary discovered outputs Pull Request 12088

• Fix mule job messaging Pull Request 11148

• Deal with empty claim names in k8s runner (thanks to @nuwang). Pull Request 11223

• Fix SLURM runner for real user setups and avoid uneccesary chowns (thanks to @bernt-matthias). Pull Request 11403

• Prevent endless fail_job cycles Pull Request 11673

• Fix value of ‘unknown_error’ resubmit condition variable (thanks to @brinkmanlab). Pull Request 11749

• Pulsar: mark cancelled jobs as finished (thanks to @abretaud). Pull Request 11763

• Lower tool id case while populating resource params (thanks to @eancelet). Pull Request 11793

• Don’t overwrite $GALAXY_MEMORY_MB if it’s already set Pull Request 11808

• Transfer fewer unneeded files back to Galaxy when using remote extended metadata with Pulsar. Pull Request 11814

• Don’t write job and job-related attributes when creating export model Pull Request 11815

• Handle resubmission before changing job state in CLI runner (thanks to @pcm32). Pull Request 11886

• fix broken docs links Pull Request 11384

• Add missing ssl keyword in nginx example [docs] (thanks to @rhpvorderman). Pull Request 11633

• Create history_audit table to avoid write deadlocks during history.update_time updates Pull Request 11914

• Fix GET /api/datasets/ docs (thanks to @nsoranzo). Pull Request 11933

• Don’t move the update_time goalpost (thanks to @nsoranzo). Pull Request 11934

• Force galaxy_id to string in galactic_job_json (thanks to @simonbray). Pull Request 11965

• Update default base images, make DEFAULT_CHANNELS configurable via env var Pull Request 11966

• Fix mulled singularity building Pull Request 11979

• restrict invalid input in library pagination (thanks to @OlegZharkov). Pull Request 11996

• Fix breadcrumb in dataset details in libraries (thanks to @OlegZharkov). Pull Request 11998

• Fix deleted libs for user (thanks to @OlegZharkov). Pull Request 12011

• fix library dataset permissions (thanks to @OlegZharkov). Pull Request 12015

• Disable import button during “Import to History” (thanks to @OlegZharkov). Pull Request 12016

• Hide edit libraries for users (thanks to @OlegZharkov). Pull Request 12023

• Fix downloading (sub)folders from data-libraries (thanks to @OlegZharkov). Pull Request 12028

• Fix subworkflow / update all steps upgrade action Pull Request 12029

• Fix uploading multiple files in ftp upload / choose remote files Pull Request 12030

• add GALAXY_MEMORY_MB* to passt hrough (thanks to @bgruening). Pull Request 12039

• invocation_time report fix Pull Request 12070

• Fix edit field reactivity in libraries (thanks to @OlegZharkov). Pull Request 12080

• Fix select all in import from history backbone modal (thanks to @OlegZharkov). Pull Request 12082

• Fix export select_all in collections (thanks to @OlegZharkov). Pull Request 12086

• fix library search filter (thanks to @OlegZharkov). Pull Request 12087

• Fix name of datasets with invalid contents Pull Request 12107

• Beta History: implement missing advanced search filters Pull Request 10972

• Fix mypy error with Union in response_model (thanks to @davelopez). Pull Request 11132

• Minor spelling error fix (thanks to @selten). Pull Request 11135

• Fix permission in user dir library import (thanks to @OlegZharkov). Pull Request 11137

• fix error message (thanks to @bernt-matthias). Pull Request 11157

• changing tooltip to match functionality (thanks to @assuntad23). Pull Request 11204

• Copy only dataset tags in Extract Dataset tool (thanks to @pvanheus). Pull Request 11206

• Fix regression of ‘disabled’ masthead items. Pull Request 11215

• fix test_user_library_import_dir_warning (thanks to @OlegZharkov). Pull Request 11226

• Make OIDC email matching case-insensitive (thanks to @selten). Pull Request 11251

• Tool XML container requirements: fix example (thanks to @selten). Pull Request 11271

• Bugfix/8488/rule builder fails for one bad url (thanks to @assuntad23). Pull Request 11276

• Fix printing non-dict output in api/display script Pull Request 11278

• Fix images in workflow PDF report (thanks to @OlegZharkov). Pull Request 11296

• consider collections in all tests (thanks to @bernt-matthias). Pull Request 11313

• Replace Query with Path Pull Request 11320

• Custos aud handling fix Pull Request 11322

• Get latest pull request labels in maintenance bot (thanks to @nsoranzo). Pull Request 11326

• Update OIDC links (thanks to @selten). Pull Request 11362

• fix profile logic for configfile generation (thanks to @bernt-matthias). Pull Request 11380

• Standardise tool param attribute docs (thanks to @nsoranzo). Pull Request 11390

• Run maintainance bot on ready_for_review and edit Pull Request 11400

• Decrease verbosity of messages in poetry Pull Request 11405

• Rename fixtures to fix test database object name conflict Pull Request 11424

• Check for binary files at the middle of the file instead of at the beginning (thanks to @pcm32). Pull Request 11425

• Set default USE_UVICORN to true only on python >= 3.7 Pull Request 11454

• Fix galaxy.files.sources plugin unit tests being missed by CI. Pull Request 11469

• Fix exception handling in datasets display API. Pull Request 11482

• Mark some tool reload tests as expected to fail (thanks to @davelopez). Pull Request 11496

• Fix clearing of search inputs Pull Request 11526

• Fix bug with Pulsar and $__tool_directory__ (thanks to @abretaud). Pull Request 11599

• Allow any extra field in Pages API (thanks to @davelopez). Pull Request 11600

• Fix workflow labelling Pull Request 11604

• Pin refgenconf to <0.10.0 (thanks to @nsoranzo). Pull Request 11627

• Pin SQAlchemy to <1.4.0 Pull Request 11629

• Change Upload button tooltip position (thanks to @OlegZharkov). Pull Request 11634

• Set minimum requirements for starlette-context and fastapi Pull Request 11643

• Match environment variable set up by doc building workflow Pull Request 11646

• Don’t check for missing kind/ label for minor merged PRs (thanks to @nsoranzo). Pull Request 11647

• Library folder_contents API tests + small fixes (thanks to @davelopez). Pull Request 11650

• Refactor default mounting of $tmp_directory in containers (thanks to @brinkmanlab). Pull Request 11654

• Fix datatype defined column name display Pull Request 11664

• Expose command line if expose_dataset_path is set Pull Request 11687

• Hotfix/paired list builder from data library (thanks to @assuntad23). Pull Request 11700

• Make extra user preferences behave like defaultdict Pull Request 11708

• Fix importing collections to new history and import correct elements Pull Request 11718

• Removedreference to remove-extensions (thanks to @assuntad23). Pull Request 11724

• Refgenie table del (thanks to @abretaud). Pull Request 11728

• Fix job filtering by date_range_max / date_range_mix (thanks to @nsoranzo). Pull Request 11736

• Fix a bug when unzipping collections with nametags. Pull Request 11741

• Fix API job filtering by workflow or invocation (thanks to @nsoranzo). Pull Request 11751

• Assorted tool shed fixes Pull Request 11762

• Fix format=”input” with implicit conversions Pull Request 11764

• galaxy.webapps.tool_shed to webapp.tool_shed (thanks to @almahmoud). Pull Request 11765

• Fix auto-pair naming in list paired creator. Pull Request 11773

• Fix library scrolling Pull Request 11776

• Use assertRaisesRegex() to fix new B017 linting errors (thanks to @nsoranzo). Pull Request 11783

• Fix typo in upstream_mod_zip admin docs (thanks to @nsoranzo). Pull Request 11794

• Fix tool profile details in schema docs (thanks to @nsoranzo). Pull Request 11798

• Activate virtualenv in updateucsc.sh.sample (thanks to @nsoranzo). Pull Request 11800

• Backport #11815: Don’t write job and job-related attributes when creating export model Pull Request 11816

• do not chown pasted urls (thanks to @bernt-matthias). Pull Request 11818

• Fixed uploader link on tool list and legacy empty history message Pull Request 11830

• Join QueueWorker thread Pull Request 11835

• Patch to click the button which should be more stable (thanks to @hexylena). Pull Request 11838

• fix data stickiness on folder change (thanks to @OlegZharkov). Pull Request 11845

• BUGFIX: Also check for boolean True, not just string ‘True’ when evaluating conditional dependencies. (thanks to @rhpvorderman). Pull Request 11861

• Fix Delete account visibility Pull Request 11897

• Fix S3 backend support in iRODS object store (thanks to @kxk302). Pull Request 11910

• fix GalaxyInteractorApi get_tool_tests (thanks to @cat-bro). Pull Request 11911

• Stabilize test_history_options selenium test Pull Request 11918

• update legacy_framework.grids.StateColumn (bug fix) (thanks to @cat-bro). Pull Request 11923