import logging
from ..base import common
from ..base.twilltestcase import ShedTwillTestCase
log = logging.getLogger(__name__)
category_name = "Test 1460 Data Manager"
category_description = "Test script 1460 for testing Data Managers"
data_manager_repository_name = "data_manager_1460"
data_manager_repository_description = "Repository that contains a Data Manager"
data_manager_repository_long_description = f"{data_manager_repository_name}: {data_manager_repository_description}"
data_manager_name = "testing_data_manager"
data_manager_tar_file = "1460_files/data_manager_files/test_data_manager.tar"
"""
1. Add a Data Manager to toolshed
2. install Data Manager
3. Check that Data Manager tool
"""
# TODO: Allow testing actual Execution of installed Data Manager Tool.
[docs]class TestDataManagers(ShedTwillTestCase):
"""Test installing a repository containing a Data Manager."""
requires_galaxy = True
[docs] def test_0000_initiate_users_and_category(self):
"""Create necessary user accounts and login as an admin user."""
self.login(email=common.admin_email, username=common.admin_username)
self.create_category(name=category_name, description=category_description)
self.login(email=common.test_user_2_email, username=common.test_user_2_name)
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
[docs] def test_0010_create_data_manager_repository(self):
"""Create and populate data_manager_1460.
This is step 1 - Create repository data_manager_1460.
Create and populate a repository that contains a Data manager.
"""
category = self.populator.get_category_with_name(category_name)
repository = self.get_or_create_repository(
name=data_manager_repository_name,
description=data_manager_repository_description,
long_description=data_manager_repository_long_description,
owner=common.test_user_1_name,
category=category,
strings_displayed=[],
)
# Upload the data manager files to the repository.
self.commit_tar_to_repository(
repository,
data_manager_tar_file,
commit_message=f"Populate {data_manager_repository_name} with a data manager configuration.",
)
[docs] def test_0020_install_data_manager_repository(self):
"""Install the data_manager_1460 repository to galaxy.
This is step 3 - Attempt to install the repository into a galaxy instance, verify that it is installed.
"""
self._install_repository(
data_manager_repository_name,
common.test_user_1_name,
category_name,
install_tool_dependencies=False,
)
[docs] def test_0040_verify_data_manager_data_table(self):
"""Verify that the installed repository populated shed_tool_data_table.xml and the sample files."""
self.verify_installed_repository_data_table_entries(
required_data_table_entries=["data_manager_test_data_table"]
)