"""
Visualizations resource control over the API.
NOTE!: this is a work in progress and functionality and data structures
may change often.
"""
import logging
from typing import Optional
from fastapi import (
Body,
Path,
Query,
Response,
status,
)
from typing_extensions import Annotated
from galaxy.managers.context import ProvidesUserContext
from galaxy.schema.fields import DecodedDatabaseIdField
from galaxy.schema.schema import (
SetSlugPayload,
ShareWithPayload,
ShareWithStatus,
SharingStatus,
)
from galaxy.schema.visualization import (
VisualizationCreatePayload,
VisualizationCreateResponse,
VisualizationIndexQueryPayload,
VisualizationShowResponse,
VisualizationSortByEnum,
VisualizationSummaryList,
VisualizationUpdatePayload,
VisualizationUpdateResponse,
)
from galaxy.webapps.galaxy.api import (
depends,
DependsOnTrans,
IndexQueryTag,
Router,
search_query_param,
)
from galaxy.webapps.galaxy.api.common import (
LimitQueryParam,
OffsetQueryParam,
)
from galaxy.webapps.galaxy.services.visualizations import VisualizationsService
log = logging.getLogger(__name__)
router = Router(tags=["visualizations"])
DeletedQueryParam: bool = Query(
default=False, title="Display deleted", description="Whether to include deleted visualizations in the result."
)
UserIdQueryParam: Optional[DecodedDatabaseIdField] = Query(
default=None,
title="Encoded user ID to restrict query to, must be own id if not an admin user",
)
query_tags = [
IndexQueryTag("title", "The visualization's title."),
IndexQueryTag("slug", "The visualization's slug.", "s"),
IndexQueryTag("tag", "The visualization's tags.", "t"),
IndexQueryTag("user", "The visualization's owner's username.", "u"),
]
SearchQueryParam: Optional[str] = search_query_param(
model_name="Visualization",
tags=query_tags,
free_text_fields=["title", "slug", "tag", "type"],
)
SharingQueryParam: bool = Query(
default=False, title="Provide sharing status", description="Whether to provide sharing details in the result."
)
ShowOwnQueryParam: bool = Query(default=True, title="Show visualizations owned by user.", description="")
ShowPublishedQueryParam: bool = Query(default=True, title="Include published visualizations.", description="")
ShowSharedQueryParam: bool = Query(
default=False, title="Include visualizations shared with authenticated user.", description=""
)
SortByQueryParam: VisualizationSortByEnum = Query(
default="update_time",
title="Sort attribute",
description="Sort visualization index by this specified attribute on the visualization model",
)
SortDescQueryParam: bool = Query(
default=True,
title="Sort Descending",
description="Sort in descending order?",
)
VisualizationIdPathParam = Annotated[
DecodedDatabaseIdField,
Path(..., title="Visualization ID", description="The encoded database identifier of the Visualization."),
]
[docs]
@router.cbv
class FastAPIVisualizations:
service: VisualizationsService = depends(VisualizationsService)
[docs]
@router.get(
"/api/visualizations",
summary="Returns visualizations for the current user.",
)
def index(
self,
response: Response,
trans: ProvidesUserContext = DependsOnTrans,
deleted: bool = DeletedQueryParam,
limit: Optional[int] = LimitQueryParam,
offset: Optional[int] = OffsetQueryParam,
user_id: Optional[DecodedDatabaseIdField] = UserIdQueryParam,
show_own: bool = ShowOwnQueryParam,
show_published: bool = ShowPublishedQueryParam,
show_shared: bool = ShowSharedQueryParam,
sort_by: VisualizationSortByEnum = SortByQueryParam,
sort_desc: bool = SortDescQueryParam,
search: Optional[str] = SearchQueryParam,
) -> VisualizationSummaryList:
payload = VisualizationIndexQueryPayload.model_construct(
deleted=deleted,
user_id=user_id,
show_published=show_published,
show_own=show_own,
show_shared=show_shared,
sort_by=sort_by,
sort_desc=sort_desc,
limit=limit,
offset=offset,
search=search,
)
entries, total_matches = self.service.index(trans, payload, include_total_count=True)
response.headers["total_matches"] = str(total_matches)
return entries
[docs]
@router.get(
"/api/visualizations/{id}/sharing",
summary="Get the current sharing status of the given Visualization.",
)
def sharing(
self,
id: VisualizationIdPathParam,
trans: ProvidesUserContext = DependsOnTrans,
) -> SharingStatus:
"""Return the sharing status of the item."""
return self.service.shareable_service.sharing(trans, id)
[docs]
@router.put(
"/api/visualizations/{id}/enable_link_access",
summary="Makes this item accessible by a URL link.",
)
def enable_link_access(
self,
id: VisualizationIdPathParam,
trans: ProvidesUserContext = DependsOnTrans,
) -> SharingStatus:
"""Makes this item accessible by a URL link and return the current sharing status."""
return self.service.shareable_service.enable_link_access(trans, id)
[docs]
@router.put(
"/api/visualizations/{id}/disable_link_access",
summary="Makes this item inaccessible by a URL link.",
)
def disable_link_access(
self,
id: VisualizationIdPathParam,
trans: ProvidesUserContext = DependsOnTrans,
) -> SharingStatus:
"""Makes this item inaccessible by a URL link and return the current sharing status."""
return self.service.shareable_service.disable_link_access(trans, id)
[docs]
@router.put(
"/api/visualizations/{id}/publish",
summary="Makes this item public and accessible by a URL link.",
)
def publish(
self,
id: VisualizationIdPathParam,
trans: ProvidesUserContext = DependsOnTrans,
) -> SharingStatus:
"""Makes this item publicly available by a URL link and return the current sharing status."""
return self.service.shareable_service.publish(trans, id)
[docs]
@router.put(
"/api/visualizations/{id}/unpublish",
summary="Removes this item from the published list.",
)
def unpublish(
self,
id: VisualizationIdPathParam,
trans: ProvidesUserContext = DependsOnTrans,
) -> SharingStatus:
"""Removes this item from the published list and return the current sharing status."""
return self.service.shareable_service.unpublish(trans, id)
[docs]
@router.put(
"/api/visualizations/{id}/share_with_users",
summary="Share this item with specific users.",
)
def share_with_users(
self,
id: VisualizationIdPathParam,
trans: ProvidesUserContext = DependsOnTrans,
payload: ShareWithPayload = Body(...),
) -> ShareWithStatus:
"""Shares this item with specific users and return the current sharing status."""
return self.service.shareable_service.share_with_users(trans, id, payload)
[docs]
@router.put(
"/api/visualizations/{id}/slug",
summary="Set a new slug for this shared item.",
status_code=status.HTTP_204_NO_CONTENT,
)
def set_slug(
self,
id: VisualizationIdPathParam,
trans: ProvidesUserContext = DependsOnTrans,
payload: SetSlugPayload = Body(...),
):
"""Sets a new slug to access this item by URL. The new slug must be unique."""
self.service.shareable_service.set_slug(trans, id, payload)
return Response(status_code=status.HTTP_204_NO_CONTENT)
[docs]
@router.get(
"/api/visualizations/{id}",
summary="Get a visualization by ID.",
)
def show(
self,
id: VisualizationIdPathParam,
trans: ProvidesUserContext = DependsOnTrans,
) -> VisualizationShowResponse:
"""Return the visualization."""
return self.service.show(trans, id)
[docs]
@router.post(
"/api/visualizations",
summary="Create a new visualization.",
)
def create(
self,
payload: VisualizationCreatePayload = Body(...),
import_id: Optional[DecodedDatabaseIdField] = Query(
None, title="Import ID", description="The encoded database identifier of the Visualization to import."
),
trans: ProvidesUserContext = DependsOnTrans,
) -> VisualizationCreateResponse:
"""
Creates a new visualization using the given payload and does not require the import_id field.
If import_id given, it imports a copy of an existing visualization into the user's workspace and does not require the rest of the payload.
"""
return self.service.create(trans, import_id, payload)
[docs]
@router.put(
"/api/visualizations/{id}",
summary="Update a visualization.",
)
def update(
self,
id: VisualizationIdPathParam,
payload: VisualizationUpdatePayload = Body(...),
trans: ProvidesUserContext = DependsOnTrans,
) -> Optional[VisualizationUpdateResponse]:
return self.service.update(trans, id, payload)