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Source code for tool_shed.test.functional.test_1070_invalid_tool

from ..base import common
from ..base.twilltestcase import ShedTwillTestCase

repository_name = "bismark_0070"
repository_description = "Galaxy's bismark wrapper"
repository_long_description = "Long description of Galaxy's bismark wrapper"
category_name = "Test 0070 Invalid Tool Revisions"
category_description = "Test 1070 for a repository with an invalid tool."


[docs]class TestFreebayesRepository(ShedTwillTestCase): """Test repository with multiple revisions with invalid tools.""" requires_galaxy = True
[docs] def test_0000_create_or_login_admin_user(self): """Create necessary user accounts and login as an admin user.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_ensure_existence_of_repository_and_category(self): """Create freebayes repository and upload only freebayes.xml. This should result in an error message and invalid tool.""" self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) category = self.populator.get_category_with_name(category_name) repository = self.get_or_create_repository( name=repository_name, description=repository_description, long_description=repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) if self.repository_is_new(repository): self.user_populator().setup_bismark_repo(repository)
[docs] def test_0010_browse_tool_shed(self): """Browse the available tool sheds in this Galaxy instance and preview the bismark repository.""" self.browse_tool_shed(url=self.url, strings_displayed=[category_name]) category = self.populator.get_category_with_name(category_name) self.browse_category(category, strings_displayed=[repository_name]) self.preview_repository_in_tool_shed( repository_name, common.test_user_1_name, strings_displayed=[repository_name] )
[docs] def test_0015_install_freebayes_repository(self): """Install the test repository without installing tool dependencies.""" self._install_repository( repository_name, common.test_user_1_name, category_name, install_tool_dependencies=False, new_tool_panel_section_label="test_1070", ) installed_repository = self._get_installed_repository_by_name_owner(repository_name, common.test_user_1_name) assert self._get_installed_repository_for( common.test_user_1, repository_name, installed_repository.installed_changeset_revision ) self.update_installed_repository(installed_repository, verify_no_updates=True) self._assert_repo_has_invalid_tool_in_file(installed_repository, "bismark_bowtie_wrapper.xml")