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Source code for tool_shed.test.functional.test_1000_install_basic_repository

from ..base.twilltestcase import (
    common,
    ShedTwillTestCase,
)


[docs]class BasicToolShedFeatures(ShedTwillTestCase): """Test installing a basic repository."""
[docs] def test_0000_initiate_users(self): """Create necessary user accounts.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) self.login(email=common.admin_email, username=common.admin_username) self.galaxy_login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_ensure_repositories_and_categories_exist(self): """Create the 0000 category and upload the filtering repository to it, if necessary.""" self.login(email=common.admin_email, username=common.admin_username) category = self.create_category( name="Test 0000 Basic Repository Features 2", description="Test Description 0000 Basic Repository Features 2", ) category = self.create_category( name="Test 0000 Basic Repository Features 1", description="Test Description 0000 Basic Repository Features 1", ) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name="filtering_0000", description="Galaxy's filtering tool", long_description="Long description of Galaxy's filtering tool", owner=common.test_user_1_name, category=category, ) if self.repository_is_new(repository): self.upload_file( repository, filename="filtering/filtering_1.1.0.tar", filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded filtering 1.1.0 tarball.", strings_displayed=[], strings_not_displayed=[], ) self.upload_file( repository, filename="filtering/filtering_0000.txt", filepath=None, valid_tools_only=True, uncompress_file=False, remove_repo_files_not_in_tar=False, commit_message="Uploaded readme for 1.1.0", strings_displayed=[], strings_not_displayed=[], ) self.upload_file( repository, filename="filtering/filtering_2.2.0.tar", filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded filtering 2.2.0 tarball.", strings_displayed=[], strings_not_displayed=[], ) self.upload_file( repository, filename="readme.txt", filepath=None, valid_tools_only=True, uncompress_file=False, remove_repo_files_not_in_tar=False, commit_message="Uploaded readme for 2.2.0", strings_displayed=[], strings_not_displayed=[], )
[docs] def test_0010_browse_tool_sheds(self): """Browse the available tool sheds in this Galaxy instance.""" self.galaxy_login(email=common.admin_email, username=common.admin_username) self.browse_tool_shed( url=self.url, strings_displayed=["Test 0000 Basic Repository Features 1", "Test 0000 Basic Repository Features 2"], )
[docs] def test_0015_browse_test_0000_category(self): """Browse the category created in test 0000. It should contain the filtering_0000 repository also created in that test.""" category = self.populator.get_category_with_name("Test 0000 Basic Repository Features 1") self.browse_category(category, strings_displayed=["filtering_0000"])
[docs] def test_0020_preview_filtering_repository(self): """Load the preview page for the filtering_0000 repository in the tool shed.""" self.preview_repository_in_tool_shed( "filtering_0000", common.test_user_1_name, strings_displayed=["filtering_0000", "Valid tools"] )
[docs] def test_0025_install_filtering_repository(self): self.install_repository( "filtering_0000", common.test_user_1_name, "Test 0000 Basic Repository Features 1", new_tool_panel_section_label="test_1000", ) installed_repository = self.test_db_util.get_installed_repository_by_name_owner( "filtering_0000", common.test_user_1_name ) strings_displayed = [ "filtering_0000", "Galaxy's filtering tool", "user1", self.url.replace("http://", ""), str(installed_repository.installed_changeset_revision), ] self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed) strings_displayed.extend(["Installed tool shed repository", "Valid tools", "Filter1"]) self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed) self.verify_tool_metadata_for_installed_repository(installed_repository)
[docs] def test_0030_install_filtering_repository_again(self): """Attempt to install the already installed filtering repository.""" installed_repository = self.test_db_util.get_installed_repository_by_name_owner( "filtering_0000", common.test_user_1_name ) # The page displayed after installation is the ajaxian "Montior installing tool shed repositories" page. Since the filter # repository was already installed, nothing will be in the process of being installed, so the grid will not display 'filtering_0000'. post_submit_strings_not_displayed = ["filtering_0000"] self.install_repository( "filtering_0000", common.test_user_1_name, "Test 0000 Basic Repository Features 1", post_submit_strings_not_displayed=post_submit_strings_not_displayed, ) strings_displayed = [ "filtering_0000", "Galaxy's filtering tool", "user1", self.url.replace("http://", ""), str(installed_repository.installed_changeset_revision), ] self.display_installed_repository_manage_page(installed_repository, strings_displayed=strings_displayed) self.display_galaxy_browse_repositories_page(strings_displayed=strings_displayed)
[docs] def test_0035_verify_installed_repository_metadata(self): """Verify that resetting the metadata on an installed repository does not change the metadata.""" self.verify_installed_repository_metadata_unchanged("filtering_0000", common.test_user_1_name)