Source code for galaxy_test.selenium.test_collection_builders

from .framework import (
    managed_history,
    selenium_test,
    SeleniumTestCase,
)
from .upload_activity_helpers import UsesUploadActivity



[docs]
class TestCollectionBuilders(SeleniumTestCase, UsesUploadActivity):
    ensure_registered = True


[docs]
    @selenium_test
    @managed_history
    def test_build_list_simple_hidden(self):
        self.upload_context("local-file").stage_local_file(self.get_filename("1.fasta")).start()
        self._wait_for_and_select([1])
        self.history_panel_build_list_auto()
        self.collection_builder_set_name("my cool list")
        self.screenshot("collection_builder_wizard_list")
        self.collection_builder_create()
        self._wait_for_hid_visible(3)



[docs]
    @selenium_test
    @managed_history
    def test_build_list_and_show_items(self):
        self.upload_context("local-file").stage_local_file(self.get_filename("1.fasta")).start()
        self._wait_for_and_select([1])
        self.history_panel_build_list_auto()
        # this toggles the checkbox to not hide originals
        self.collection_builder_hide_originals()
        self.collection_builder_set_name("my cool list")
        self.collection_builder_create()
        self._wait_for_hid_visible(3)



[docs]
    @selenium_test
    @managed_history
    def test_build_paired_list_auto_matched(self):
        uploader = self.upload_context("paste-content")
        uploader.stage_paste_content("forward content", {"name": "basename_1.fasta"})
        uploader.stage_paste_content("reverse content", {"name": "basename_2.fasta"})
        uploader.start()
        self._wait_for_and_select([1, 2])
        self.history_panel_build_list_of_pairs()
        self.collection_builder_set_name("my awesome paired list")
        self.screenshot("collection_builder_paired_list")
        self.collection_builder_create()
        self._wait_for_hid_visible(5)
        # switch to hidden filters to see the hidden datasets appear
        self._show_hidden_content()
        self._wait_for_hid_visible(1)
        self._wait_for_hid_visible(2)
        self._wait_for_hid_visible(3)
        self._wait_for_hid_visible(4)



[docs]
    @selenium_test
    @managed_history
    def test_build_paired_list_manual_matched(self):
        uploader = self.upload_context("paste-content")
        uploader.stage_paste_content("forward content", {"name": "thisdoesnotmatch.fasta"})
        uploader.stage_paste_content("reverse content", {"name": "becausethenamesarentalike.fasta"})
        uploader.start()
        self._wait_for_and_select([1, 2])
        self.history_panel_build_list_of_pairs()
        self.collection_builder_pair_rows(0, 1)
        row0 = self.components.collection_builders.list_wizard.row._(index=0)
        row0.unlink_button.wait_for_present()
        row0.link_button.assert_absent()

        self.collection_builder_set_name("my awesome paired list manual match")
        self.screenshot("collection_builder_paired_list_manual_match")
        self.collection_builder_create()
        self._wait_for_hid_visible(5)
        # switch to hidden filters to see the hidden datasets appear
        self._show_hidden_content()
        self._wait_for_hid_visible(1)
        self._wait_for_hid_visible(2)
        self._wait_for_hid_visible(3)
        self._wait_for_hid_visible(4)



[docs]
    @selenium_test
    @managed_history
    def test_build_paired_unpaired_list(self):
        uploader = self.upload_context("paste-content")
        uploader.stage_paste_content("forward content", {"name": "commonprefix_1.fasta"})
        uploader.stage_paste_content("reverse content", {"name": "commonprefix_2.fasta"})
        uploader.stage_paste_content("unmatched", {"name": "unmatched.fasta"})
        uploader.start()
        self._wait_for_and_select([1, 2, 3])
        self.history_panel_build_list_of_paired_or_unpaireds()

        self.collection_builder_set_name("mix of paired and unpaired data")
        self.screenshot("collection_builder_paired_or_unpaired_list")
        self.collection_builder_create()
        self._wait_for_hid_visible(7)



[docs]
    @selenium_test
    @managed_history
    def test_build_list_of_lists(self):
        uploader = self.upload_context("paste-content")
        uploader.stage_paste_content("forward content 1", {"name": "foo1.txt"})
        uploader.stage_paste_content("reverse content 1", {"name": "bar1.txt"})
        uploader.stage_paste_content("forward content 2", {"name": "foo2.txt"})
        uploader.stage_paste_content("forward content 2", {"name": "bar2.txt"})
        uploader.start()
        self._wait_for_and_select([1, 2, 3, 4])
        self.history_panel_build_list_of_lists()
        self.list_wizard_click_cell_and_send_keys("outerIdentifier", 2, "outer1")
        self.list_wizard_click_cell_and_send_keys("outerIdentifier", 3, "outer1")
        self.list_wizard_click_cell_and_send_keys("outerIdentifier", 4, "outer2")
        self.list_wizard_click_cell_and_send_keys("outerIdentifier", 5, "outer2")
        self.collection_builder_set_name("nested list")
        self.screenshot("collection_builder_list_list")
        self.collection_builder_create()
        self._wait_for_hid_visible(9)



[docs]
    @selenium_test
    @managed_history
    def test_build_paired_list_show_original(self):
        uploader = self.upload_context("paste-content")
        uploader.stage_paste_content("forward content", {"name": "thisdoesnotmatch.fasta"})
        uploader.stage_paste_content("reverse content", {"name": "becausethenamesarentalike.fasta"})
        uploader.start()
        self._wait_for_and_select([1, 2])
        self.history_panel_build_list_of_pairs()

        self.collection_builder_pair_rows(0, 1)
        row0 = self.components.collection_builders.list_wizard.row._(index=0)
        row0.unlink_button.wait_for_present()
        row0.link_button.assert_absent()

        self.collection_builder_hide_originals()
        self.collection_builder_set_name("my awesome paired list shown originals")
        self.collection_builder_create()
        self._wait_for_hid_visible(5)
        self._wait_for_hid_visible(1)
        self._wait_for_hid_visible(2)
        self._show_hidden_content()
        self._wait_for_hid_visible(3)
        self._wait_for_hid_visible(4)



[docs]
    @selenium_test
    @managed_history
    def test_build_simple_list_via_rules_hidden(self):
        self.upload_context("paste-content").stage_paste_content("fasta content", {"name": "1.fasta"}).start()
        self._wait_for_and_select([1])
        self.history_panel_build_rule_builder_for_selection()
        self.collection_builder_set_name("my cool list from rules originals hidden")
        self.screenshot("collection_builder_rules_list")
        self.collection_builder_create()
        self._wait_for_hid_visible(3)
        self._show_hidden_content()
        self._wait_for_hid_visible(1)
        self._wait_for_hid_visible(2)


    def _wait_for_hid_visible(self, hid, state="ok"):
        # takes a little while for these things to upload and end up in the history
        timeout = self.wait_length(self.wait_types.JOB_COMPLETION)
        row_selector = self.content_item_by_attributes(hid=hid, state=state)
        self.wait_for_visible(row_selector, timeout=timeout)

    def _collection_dropdown(self, option_description):
        return self.use_bootstrap_dropdown(option=option_description, menu="selected content menu")

    def _wait_for_and_select(self, hids):
        self.history_panel_wait_for_and_select(hids)

    def _show_hidden_content(self):
        """Switches the hidden filter toggle on"""
        self.sleep_for(self.wait_types.UX_RENDER)
        filter_element = self.history_element(
            attribute_value="filter text input", scope=".content-operations-filters"
        ).wait_for_and_click()
        filter_element.send_keys("visible:false")
        self.sleep_for(self.wait_types.UX_RENDER)