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Source code for galaxy.workflow.reports.generators.markdown

"""The class defines the default stock Galaxy workflow reporting plugin
"""
import logging
import string

from ..generators import WorkflowMarkdownGeneratorPlugin

log = logging.getLogger(__name__)

DEFAULT_MARKDOWN = """
# ${title}

## Workflow Inputs
```galaxy
invocation_inputs()
```

## Workflow Outputs
```galaxy
invocation_outputs()
```

## Workflow
```galaxy
workflow_display()
```
"""


[docs]class MarkdownWorkflowMarkdownReportGeneratorPlugin(WorkflowMarkdownGeneratorPlugin): plugin_type = "markdown" def _generate_report_markdown(self, trans, invocation, runtime_report_config_json=None): reports_config = (invocation.workflow.reports_config or {}).copy() # TODO: more intelligent merge here. reports_config.update(runtime_report_config_json or {}) title = reports_config.get("title", f"Workflow Execution Summary of {invocation.workflow.stored_workflow.name}") markdown = reports_config.get("markdown") if markdown is None: template_kwds = {"title": title} markdown = string.Template(DEFAULT_MARKDOWN).safe_substitute(**template_kwds) return markdown
__all__ = ("MarkdownWorkflowMarkdownReportGeneratorPlugin",)