This document is for an in-development version of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for galaxy.webapps.galaxy.controllers.shed_tool_static

import logging
import os

from galaxy import web
from galaxy.exceptions import RequestParameterInvalidException
from galaxy.util.path import (
from galaxy.webapps.base.controller import BaseUIController

log = logging.getLogger(__name__)

def _asset_exists_and_is_safe(repo_path, asset_path):
    if not safe_contains(repo_path, asset_path):
        raise RequestParameterInvalidException()
    return os.path.exists(asset_path)

[docs]class ShedToolStatic(BaseUIController):
[docs] @web.expose def index(self, trans, shed, owner, repo, tool, version, image_file, **kwargs): """ Open an image file that is contained in an installed tool shed repository or that is referenced by a URL for display. The image can be defined in either a README.rst file contained in the repository or the help section of a Galaxy tool config that is contained in the repository. The following image definitions are all supported. The former $PATH_TO_IMAGES is no longer required, and is now ignored. .. image:: https://raw.github.com/galaxy/some_image.png .. image:: $PATH_TO_IMAGES/some_image.png .. image:: /static/images/some_image.gif .. image:: some_image.jpg .. image:: /deep/some_image.png """ guid = "/".join((shed, "repos", owner, repo, tool, version)) tool = trans.app.toolbox.get_tool(guid) repo_path = os.path.abspath(tool._repository_dir) found_path = None if "static/images" not in image_file: asset_path = os.path.abspath(join(repo_path, "static", "images", image_file)) if _asset_exists_and_is_safe(repo_path, asset_path): found_path = asset_path if not found_path: asset_path = os.path.abspath(join(repo_path, image_file)) if _asset_exists_and_is_safe(repo_path, asset_path): found_path = asset_path if found_path: ext = os.path.splitext(image_file)[-1].lstrip(".") if ext: mime = trans.app.datatypes_registry.get_mimetype_by_extension(ext) if mime: trans.response.set_content_type(mime) return open(found_path, "rb") else: raise RequestParameterInvalidException()