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Source code for galaxy.tool_util.deps.resolvers.homebrew
"""
This file implements a brew resolver for Galaxy requirements. In order for Galaxy
to pick up on recursively defined and versioned brew dependencies recipes should
be installed using the experimental `brew-vinstall` external command.
More information here:
https://github.com/jmchilton/brew-tests
https://github.com/Homebrew/homebrew-science/issues/1191
This is still an experimental module and there will almost certainly be backward
incompatible changes coming.
"""
from . import (
DependencyResolver,
NullDependency,
)
from .resolver_mixins import UsesHomebrewMixin
# TODO: Implement prefer version linked...
PREFER_VERSION_LINKED = "linked"
PREFER_VERSION_LATEST = "latest"
UNKNOWN_PREFER_VERSION_MESSAGE_TEMPLATE = "HomebrewDependencyResolver prefer_version must be %s"
UNKNOWN_PREFER_VERSION_MESSAGE = UNKNOWN_PREFER_VERSION_MESSAGE_TEMPLATE % (PREFER_VERSION_LATEST)
DEFAULT_PREFER_VERSION = PREFER_VERSION_LATEST
[docs]class HomebrewDependencyResolver(DependencyResolver, UsesHomebrewMixin):
resolver_type = "homebrew"
[docs] def __init__(self, dependency_manager, **kwds):
self.versionless = _string_as_bool(kwds.get("versionless", "false"))
self.prefer_version = kwds.get("prefer_version", None)
if self.prefer_version is None:
self.prefer_version = DEFAULT_PREFER_VERSION
if self.versionless and self.prefer_version not in [PREFER_VERSION_LATEST]:
raise Exception(UNKNOWN_PREFER_VERSION_MESSAGE)
self._init_homebrew(**kwds)
[docs] def resolve(self, requirement, **kwds):
name, version, type = requirement.name, requirement.version, requirement.type
if type != "package":
return NullDependency(version=version, name=name)
if version is None or self.versionless:
return self._find_dep_default(name, version)
else:
return self._find_dep_versioned(name, version)
def _string_as_bool(value):
return str(value).lower() == "true"
__all__ = ("HomebrewDependencyResolver",)