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Source code for galaxy.datatypes.coverage

Coverage datatypes


import logging

from galaxy.datatypes import metadata
from galaxy.datatypes.metadata import MetadataElement
from galaxy.datatypes.tabular import Tabular

log = logging.getLogger(__name__)

[docs]class LastzCoverage(Tabular): file_ext = "coverage" MetadataElement(name="chromCol", default=1, desc="Chrom column", param=metadata.ColumnParameter) MetadataElement(name="positionCol", default=2, desc="Position column", param=metadata.ColumnParameter) MetadataElement( name="forwardCol", default=3, desc="Forward or aggregate read column", param=metadata.ColumnParameter ) MetadataElement( name="reverseCol", desc="Optional reverse read column", param=metadata.ColumnParameter, optional=True, no_value=0, ) MetadataElement(name="columns", default=3, desc="Number of columns", readonly=True, visible=False)