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galaxy.datatypes.display_applications package

Contains functionality of the newer XML defined external display applications (not hardcoded into datatype classes).

Submodules

galaxy.datatypes.display_applications.application module

galaxy.datatypes.display_applications.application.quote_plus_string(value, **kwds)

class galaxy.datatypes.display_applications.application.DisplayApplicationLink(display_application)

Bases: object

classmethod from_elem(elem, display_application, other_values=None)

__init__(display_application)

Initialize self. See help(type(self)) for accurate signature.

get_display_url(data, trans)

get_inital_values(data, trans)

build_parameter_dict(data, dataset_hash, user_hash, trans, app_kwds)

filter_by_dataset(data, trans)

class galaxy.datatypes.display_applications.application.DynamicDisplayApplicationBuilder(elem, display_application, build_sites)

Bases: object

__init__(elem, display_application, build_sites)

Initialize self. See help(type(self)) for accurate signature.

class galaxy.datatypes.display_applications.application.PopulatedDisplayApplicationLink(display_application_link, data, dataset_hash, user_hash, trans, app_kwds)

Bases: object

__init__(display_application_link, data, dataset_hash, user_hash, trans, app_kwds)

Initialize self. See help(type(self)) for accurate signature.

display_ready()

get_param_value(name)

preparing_display()

prepare_display()

get_prepare_steps(datasets_only=True)

display_url()

get_param_name_by_url(url)

property allow_cors

class galaxy.datatypes.display_applications.application.DisplayApplication(display_id, name, app, version=None, filename=None, elem=None)

Bases: object

classmethod from_file(filename, app)

classmethod from_elem(elem, app, filename=None)

__init__(display_id, name, app, version=None, filename=None, elem=None)

Initialize self. See help(type(self)) for accurate signature.

get_link(link_name, data, dataset_hash, user_hash, trans, app_kwds)

filter_by_dataset(data, trans)

reload()

add_data_table_watch(table_name, version=None)

galaxy.datatypes.display_applications.parameters module

class galaxy.datatypes.display_applications.parameters.DisplayApplicationParameter(elem, link)

Bases: object

Abstract Class for Display Application Parameters

type: Optional[str] = None

classmethod from_elem(elem, link)

__init__(elem, link)

Initialize self. See help(type(self)) for accurate signature.

get_value(other_values, dataset_hash, user_hash, trans)

prepare(other_values, dataset_hash, user_hash, trans)

ready(other_values)

is_preparing(other_values)

build_url(other_values)

class galaxy.datatypes.display_applications.parameters.DisplayApplicationDataParameter(elem, link)

Bases: galaxy.datatypes.display_applications.parameters.DisplayApplicationParameter

Parameter that returns a file_name containing the requested content

type: Optional[str] = 'data'

__init__(elem, link)

Initialize self. See help(type(self)) for accurate signature.

property formats

get_value(other_values, dataset_hash, user_hash, trans)

prepare(other_values, dataset_hash, user_hash, trans)

is_preparing(other_values)

ready(other_values)

class galaxy.datatypes.display_applications.parameters.DisplayApplicationTemplateParameter(elem, link)

Bases: galaxy.datatypes.display_applications.parameters.DisplayApplicationParameter

Parameter that returns a string containing the requested content

type: Optional[str] = 'template'

__init__(elem, link)

Initialize self. See help(type(self)) for accurate signature.

get_value(other_values, dataset_hash, user_hash, trans)

class galaxy.datatypes.display_applications.parameters.DisplayParameterValueWrapper(value, parameter, other_values, dataset_hash, user_hash, trans)

Bases: object

ACTION_NAME = 'param'

__init__(value, parameter, other_values, dataset_hash, user_hash, trans)

Initialize self. See help(type(self)) for accurate signature.

mime_type(action_param_extra=None)

property url

property action_name

property qp

class galaxy.datatypes.display_applications.parameters.DisplayDataValueWrapper(value, parameter, other_values, dataset_hash, user_hash, trans)

Bases: galaxy.datatypes.display_applications.parameters.DisplayParameterValueWrapper

ACTION_NAME = 'data'

mime_type(action_param_extra=None)

property action_name

property qp

galaxy.datatypes.display_applications.util module

galaxy.datatypes.display_applications.util.encode_dataset_user(trans, dataset, user)

galaxy.datatypes.display_applications.util.decode_dataset_user(trans, dataset_hash, user_hash)