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Source code for tool_shed.test.functional.test_1190_complex_prior_installation_required

import os

from ..base.twilltestcase import (
    common,
    ShedTwillTestCase,
)

matplotlib_repository_name = "package_matplotlib_1_2_0170"
matplotlib_repository_description = "Contains a tool dependency definition that downloads and compiles version 1.2.x of the the python matplotlib package."
matplotlib_repository_long_description = (
    "This repository is intended to be defined as a complex repository dependency within a separate repository."
)

numpy_repository_name = "package_numpy_1_7_0170"
numpy_repository_description = (
    "Contains a tool dependency definition that downloads and compiles version 1.7 of the the python numpy package."
)
numpy_repository_long_description = (
    "This repository is intended to be defined as a complex repository dependency within a separate repository."
)

category_name = "Test 0170 Prior Installation Complex Dependencies"
category_description = "Test 0170 Prior Installation Complex Dependencies"

"""
1. Create and populate repositories package_matplotlib_1_2_0170 and package_numpy_1_7_0170.
2. Create a complex repository dependency on package_numpy_1_7_0170, and upload this to package_matplotlib_1_2_0170.
3. Verify that package_matplotlib_1_2_0170 now depends on package_numpy_1_7_0170, and that the inherited tool dependency displays correctly.
4. Install package_matplotlib_1_2_0170 with repository dependencies.
5. Verify that the prior_installation_required attribute resulted in package_numpy_1_7_0170 being installed first.
"""

running_standalone = False


[docs]class TestComplexPriorInstallation(ShedTwillTestCase): """Test features related to datatype converters."""
[docs] def test_0000_initiate_users(self): """Create necessary user accounts.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) self.login(email=common.admin_email, username=common.admin_username)
[docs] def test_0005_create_matplotlib_repository(self): """Create and populate the package_matplotlib_1_2_0170 repository. This is step 1 - Create and populate repositories package_matplotlib_1_2_0170 and package_numpy_1_7_0170. """ global running_standalone category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository( name=matplotlib_repository_name, description=matplotlib_repository_description, long_description=matplotlib_repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) if self.repository_is_new(repository): running_standalone = True self.upload_file( repository, filename="package_matplotlib/package_matplotlib_1_2.tar", filepath=None, valid_tools_only=False, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded matplotlib tool dependency tarball.", strings_displayed=[ "This repository currently contains a single file named <b>tool_dependencies.xml</b>" ], strings_not_displayed=[], )
[docs] def test_0010_create_numpy_repository(self): """Create and populate the package_numpy_1_7_0170 repository. This is step 1 - Create and populate repositories package_matplotlib_1_2_0170 and package_numpy_1_7_0170. """ global running_standalone category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) if running_standalone: repository = self.get_or_create_repository( name=numpy_repository_name, description=numpy_repository_description, long_description=numpy_repository_long_description, owner=common.test_user_1_name, category=category, strings_displayed=[], ) self.upload_file( repository, filename="package_numpy/package_numpy_1_7.tar", filepath=None, valid_tools_only=False, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded numpy tool dependency tarball.", strings_displayed=[ "This repository currently contains a single file named <b>tool_dependencies.xml</b>" ], strings_not_displayed=[], )
[docs] def test_0015_create_complex_repository_dependency(self): """Create a dependency on package_numpy_1_7_0170. This is step 2 - Create a complex repository dependency on package_numpy_1_7_0170, and upload this to package_matplotlib_1_2_0170. package_matplotlib_1_2_0170 should depend on package_numpy_1_7_0170, with prior_installation_required set to True. When matplotlib is selected for installation, the result should be that numpy is compiled and installed first. """ global running_standalone numpy_repository = self.test_db_util.get_repository_by_name_and_owner( numpy_repository_name, common.test_user_1_name ) matplotlib_repository = self.test_db_util.get_repository_by_name_and_owner( matplotlib_repository_name, common.test_user_1_name ) # Generate the new dependency XML. Normally, the create_repository_dependency method would be used for this, but # it replaces any existing tool or repository dependency XML file with the generated contents. This is undesirable # in this case, because matplotlib already has an additional tool dependency definition that we don't want to # overwrite. new_xml = ' <package name="numpy" version="1.7">\n' new_xml += ' <repository toolshed="%s" name="%s" owner="%s" changeset_revision="%s" prior_installation_required="True" />\n' new_xml += " </package>\n" url = self.url name = numpy_repository.name owner = numpy_repository.user.username if running_standalone: changeset_revision = self.get_repository_tip(numpy_repository) processed_xml = new_xml % (url, name, owner, changeset_revision) original_xml = open(self.get_filename("package_matplotlib/tool_dependencies.xml")).read() dependency_xml_path = self.generate_temp_path("test_0170", additional_paths=["matplotlib"]) new_xml_file = os.path.join(dependency_xml_path, "tool_dependencies.xml") open(new_xml_file, "w").write(original_xml.replace("<!--NUMPY-->", processed_xml)) # Upload the generated complex repository dependency XML to the matplotlib repository. self.upload_file( matplotlib_repository, filename="tool_dependencies.xml", filepath=dependency_xml_path, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded complex repository dependency on numpy 1.7.", strings_displayed=[], strings_not_displayed=[], )
[docs] def test_0020_verify_generated_dependency(self): """Verify that matplotlib now has a package tool dependency and a complex repository dependency. This is step 3 - Verify that package_matplotlib_1_2_0170 now depends on package_numpy_1_7_0170, and that the inherited tool dependency displays correctly. 'Inherited' in this case means that matplotlib should show a package tool dependency on numpy version 1.7, and a repository dependency on the latest revision of package_numpy_1_7_0170. """ numpy_repository = self.test_db_util.get_repository_by_name_and_owner( numpy_repository_name, common.test_user_1_name ) matplotlib_repository = self.test_db_util.get_repository_by_name_and_owner( matplotlib_repository_name, common.test_user_1_name ) changeset_revision = self.get_repository_tip(numpy_repository) self.check_repository_dependency(matplotlib_repository, depends_on_repository=numpy_repository) self.display_manage_repository_page( matplotlib_repository, strings_displayed=["numpy", "1.7", "package", changeset_revision] )
[docs] def test_0025_install_matplotlib_repository(self): """Install the package_matplotlib_1_2_0170 repository. This is step 4 - Install package_matplotlib_1_2_0170 with repository dependencies. """ self.galaxy_login(email=common.admin_email, username=common.admin_username) matplotlib_repository = self.test_db_util.get_repository_by_name_and_owner( matplotlib_repository_name, common.test_user_1_name ) preview_strings_displayed = ["package_matplotlib_1_2_0170", self.get_repository_tip(matplotlib_repository)] strings_displayed = ["Handle repository dependencies", numpy_repository_name, "Never installed"] self.install_repository( matplotlib_repository_name, common.test_user_1_name, category_name, install_tool_dependencies=False, install_repository_dependencies=True, preview_strings_displayed=preview_strings_displayed, strings_displayed=strings_displayed, strings_not_displayed=[], post_submit_strings_displayed=["package_matplotlib_1_2_0170", "New"], includes_tools_for_display_in_tool_panel=False, )
[docs] def test_0030_verify_installation_order(self): """Verify that the numpy repository was installed before the matplotlib repository. This is step 5 - Verify that the prior_installation_required attribute resulted in package_numpy_1_7_0170 being installed first. In the previous step, package_matplotlib_1_2_0170 was selected for installation, but package_numpy_1_7_0170 had the prior_installation_required attribute set. Confirm that this resulted in package_numpy_1_7_0170 being installed before package_matplotlib_1_2_0170. """ matplotlib_repository = self.test_db_util.get_installed_repository_by_name_owner( matplotlib_repository_name, common.test_user_1_name ) numpy_repository = self.test_db_util.get_installed_repository_by_name_owner( numpy_repository_name, common.test_user_1_name ) assert ( matplotlib_repository.update_time > numpy_repository.update_time ), "Error: package_numpy_1_7_0170 shows a later update time than package_matplotlib_1_2_0170"