Source code for galaxy.managers.visualizations

"""
Manager and Serializers for Visualizations.

Visualizations are saved configurations/variables used to
reproduce a specific view in a Galaxy visualization.
"""
import logging

from galaxy import model
from galaxy.managers import sharable
from galaxy.structured_app import MinimalManagerApp

log = logging.getLogger(__name__)


[docs]class VisualizationManager(sharable.SharableModelManager):
    """
    Handle operations outside and between visualizations and other models.
    """

    # TODO: revisions

    model_class = model.Visualization
    foreign_key_name = "visualization"
    user_share_model = model.VisualizationUserShareAssociation

    tag_assoc = model.VisualizationTagAssociation
    annotation_assoc = model.VisualizationAnnotationAssociation
    rating_assoc = model.VisualizationRatingAssociation

    # def copy( self, trans, visualization, user, **kwargs ):
    #    """
    #    """
    #    pass


[docs]class VisualizationSerializer(sharable.SharableModelSerializer):
    """
    Interface/service object for serializing visualizations into dictionaries.
    """

    model_manager_class = VisualizationManager
    SINGLE_CHAR_ABBR = "v"

[docs]    def __init__(self, app: MinimalManagerApp):
        super().__init__(app)
        self.visualization_manager = self.manager

        self.default_view = "summary"
        self.add_view("summary", [])
        self.add_view("detailed", [])

[docs]    def add_serializers(self):
        super().add_serializers()
        self.serializers.update({})


[docs]class VisualizationDeserializer(sharable.SharableModelDeserializer):
    """
    Interface/service object for validating and deserializing
    dictionaries into visualizations.
    """

    model_manager_class = VisualizationManager

[docs]    def __init__(self, app):
        super().__init__(app)
        self.visualization_manager = self.manager

[docs]    def add_deserializers(self):
        super().add_deserializers()
        self.deserializers.update({})
        self.deserializable_keyset.update(self.deserializers.keys())