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Source code for galaxy.managers.visualizations

Manager and Serializers for Visualizations.

Visualizations are saved configurations/variables used to
reproduce a specific view in a Galaxy visualization.
import logging

from galaxy import model
from galaxy.managers import sharable
from galaxy.structured_app import MinimalManagerApp

log = logging.getLogger(__name__)

[docs]class VisualizationManager(sharable.SharableModelManager): """ Handle operations outside and between visualizations and other models. """ # TODO: revisions model_class = model.Visualization foreign_key_name = "visualization" user_share_model = model.VisualizationUserShareAssociation tag_assoc = model.VisualizationTagAssociation annotation_assoc = model.VisualizationAnnotationAssociation rating_assoc = model.VisualizationRatingAssociation
# def copy( self, trans, visualization, user, **kwargs ): # """ # """ # pass
[docs]class VisualizationSerializer(sharable.SharableModelSerializer): """ Interface/service object for serializing visualizations into dictionaries. """ model_manager_class = VisualizationManager SINGLE_CHAR_ABBR = "v"
[docs] def __init__(self, app: MinimalManagerApp): super().__init__(app) self.visualization_manager = self.manager self.default_view = "summary" self.add_view("summary", []) self.add_view("detailed", [])
[docs] def add_serializers(self): super().add_serializers() self.serializers.update({})
[docs]class VisualizationDeserializer(sharable.SharableModelDeserializer): """ Interface/service object for validating and deserializing dictionaries into visualizations. """ model_manager_class = VisualizationManager
[docs] def __init__(self, app): super().__init__(app) self.visualization_manager = self.manager
[docs] def add_deserializers(self): super().add_deserializers() self.deserializers.update({}) self.deserializable_keyset.update(self.deserializers.keys())