This document is for an in-development version of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for galaxy.managers.visualizations

Manager and Serializers for Visualizations.

Visualizations are saved configurations/variables used to
reproduce a specific view in a Galaxy visualization.
import logging

from galaxy import model
from galaxy.managers import sharable

log = logging.getLogger(__name__)

[docs]class VisualizationManager(sharable.SharableModelManager): """ Handle operations outside and between visualizations and other models. """ # TODO: revisions model_class = model.Visualization foreign_key_name = 'visualization' user_share_model = model.VisualizationUserShareAssociation tag_assoc = model.VisualizationTagAssociation annotation_assoc = model.VisualizationAnnotationAssociation rating_assoc = model.VisualizationRatingAssociation
[docs] def __init__(self, app, *args, **kwargs): """ """ super().__init__(app, *args, **kwargs)
# def copy( self, trans, visualization, user, **kwargs ): # """ # """ # pass
[docs]class VisualizationSerializer(sharable.SharableModelSerializer): """ Interface/service object for serializing visualizations into dictionaries. """ model_manager_class = VisualizationManager SINGLE_CHAR_ABBR = 'v'
[docs] def __init__(self, app): super().__init__(app) self.visualization_manager = self.manager self.default_view = 'summary' self.add_view('summary', []) self.add_view('detailed', [])
[docs] def add_serializers(self): super().add_serializers() self.serializers.update({ })
[docs]class VisualizationDeserializer(sharable.SharableModelDeserializer): """ Interface/service object for validating and deserializing dictionaries into visualizations. """ model_manager_class = VisualizationManager
[docs] def __init__(self, app): super().__init__(app) self.visualization_manager = self.manager
[docs] def add_deserializers(self): super().add_deserializers() self.deserializers.update({ }) self.deserializable_keyset.update(self.deserializers.keys())