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Source code for tool_shed.test.functional.test_0310_hg_api_features
import logging
import os
from ..base.twilltestcase import common, ShedTwillTestCase
log = logging.getLogger(__name__)
repository_name = 'filtering_0310'
repository_description = "Galaxy's filtering tool for test 0310"
repository_long_description = "Long description of Galaxy's filtering tool for test 0310"
category_name = 'Test 0310 - HTTP Repo features'
category_description = 'Test 0310 for verifying the tool shed http interface to mercurial.'
'''
1. Create a repository.
2. Clone the repository to a local path.
'''
[docs]class TestHgWebFeatures(ShedTwillTestCase):
'''Test http mercurial interface.'''
[docs] def test_0000_initiate_users(self):
"""Create necessary user accounts and login as an admin user."""
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
test_user_1 = self.test_db_util.get_user(common.test_user_1_email)
assert test_user_1 is not None, 'Problem retrieving user with email %s from the database' % common.test_user_1_email
self.test_db_util.get_private_role(test_user_1)
self.login(email=common.test_user_2_email, username=common.test_user_2_name)
test_user_2 = self.test_db_util.get_user(common.test_user_2_email)
assert test_user_2 is not None, 'Problem retrieving user with email %s from the database' % common.test_user_2_email
self.test_db_util.get_private_role(test_user_2)
self.login(email=common.admin_email, username=common.admin_username)
admin_user = self.test_db_util.get_user(common.admin_email)
assert admin_user is not None, 'Problem retrieving user with email %s from the database' % common.admin_email
self.test_db_util.get_private_role(admin_user)
[docs] def test_0005_create_filtering_repository(self):
'''Create and populate the filtering_0310 repository.'''
'''
We are at step 1 - Create a repository.
Create and populate the filtering_0310 repository.
'''
category = self.create_category(name=category_name, description=category_description)
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
repository = self.get_or_create_repository(name=repository_name,
description=repository_description,
long_description=repository_long_description,
owner=common.test_user_1_name,
category_id=self.security.encode_id(category.id),
strings_displayed=[])
self.upload_file(repository,
filename='filtering/filtering_1.1.0.tar',
filepath=None,
valid_tools_only=True,
uncompress_file=True,
remove_repo_files_not_in_tar=True,
commit_message="Uploaded filtering 1.1.0.",
strings_displayed=[],
strings_not_displayed=[])
self.upload_file(repository,
filename='filtering/filtering_test_data.tar',
filepath=None,
valid_tools_only=True,
uncompress_file=True,
remove_repo_files_not_in_tar=False,
commit_message="Uploaded filtering test data.",
strings_displayed=[],
strings_not_displayed=[])
[docs] def test_0010_clone(self):
'''Clone the repository to a local path.'''
'''
We are at step 2 - Clone the repository to a local path.
The repository should have the following files:
filtering.py
filtering.xml
test-data/
test-data/1.bed
test-data/7.bed
test-data/filter1_in3.sam
test-data/filter1_inbad.bed
test-data/filter1_test1.bed
test-data/filter1_test2.bed
test-data/filter1_test3.sam
test-data/filter1_test4.bed
'''
repository = self.test_db_util.get_repository_by_name_and_owner(repository_name, common.test_user_1_name)
clone_path = self.generate_temp_path('test_0310', additional_paths=['filtering_0310', 'user2'])
self.clone_repository(repository, clone_path)
files_in_repository = os.listdir(clone_path)
assert 'filtering.py' in files_in_repository, 'File not found in repository: filtering.py'