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Source code for galaxy.tools.actions.data_manager

import logging

from galaxy.model.base import transaction
from . import DefaultToolAction

log = logging.getLogger(__name__)


class DataManagerToolAction(DefaultToolAction):
    """Tool action used for Data Manager Tools"""

    def execute(self, tool, trans, **kwds):
        rval = super().execute(tool, trans, **kwds)
        if isinstance(rval, tuple) and len(rval) >= 2 and isinstance(rval[0], trans.app.model.Job):
            assoc = trans.app.model.DataManagerJobAssociation(job=rval[0], data_manager_id=tool.data_manager_id)
            trans.sa_session.add(assoc)
            with transaction(trans.sa_session):
                trans.sa_session.commit()
        else:
            log.error(f"Got bad return value from DefaultToolAction.execute(): {rval}")
        return rval