Warning

This document is for an in-development version of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for galaxy.tools.actions.data_manager

import logging

from . import DefaultToolAction

log = logging.getLogger(__name__)


class DataManagerToolAction(DefaultToolAction):
    """Tool action used for Data Manager Tools"""

    def execute(self, tool, trans, **kwds):
        rval = super(DataManagerToolAction, self).execute(tool, trans, **kwds)
        if isinstance(rval, tuple) and len(rval) >= 2 and isinstance(rval[0], trans.app.model.Job):
            assoc = trans.app.model.DataManagerJobAssociation(job=rval[0], data_manager_id=tool.data_manager_id)
            trans.sa_session.add(assoc)
            trans.sa_session.flush()
        else:
            log.error("Got bad return value from DefaultToolAction.execute(): %s" % (rval))
        return rval