Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

galaxy.jobs.runners.util.cli package

class galaxy.jobs.runners.util.cli.CliInterface

Bases: object

High-level interface for loading shell and job plugins and matching them to specified parameters.

__init__()

get_plugins(shell_params, job_params)

Return shell and job interface defined by and configured via specified params.

get_shell_plugin(shell_params)

get_job_interface(job_params)

galaxy.jobs.runners.util.cli.split_params(params)

Subpackages

• galaxy.jobs.runners.util.cli.job package
  • Submodules
  • galaxy.jobs.runners.util.cli.job.lsf module
  • galaxy.jobs.runners.util.cli.job.pbs module
  • galaxy.jobs.runners.util.cli.job.slurm module
  • galaxy.jobs.runners.util.cli.job.slurm_torque module
  • galaxy.jobs.runners.util.cli.job.torque module
• galaxy.jobs.runners.util.cli.shell package
  • Submodules
  • galaxy.jobs.runners.util.cli.shell.local module
  • galaxy.jobs.runners.util.cli.shell.rsh module

Submodules

galaxy.jobs.runners.util.cli.factory module

galaxy.jobs.runners.util.cli.factory.build_cli_interface()

galaxy.jobs.runners.util.cli.factory.get_shell(params)