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galaxy.jobs.runners.util.cli package

class galaxy.jobs.runners.util.cli.CliInterface(code_dir='lib')

Bases: object

High-level interface for loading shell and job plugins and matching them to specified parameters.

__init__(code_dir='lib')

get_plugins(shell_params, job_params)

Return shell and job interface defined by and configured via specified params.

get_shell_plugin(shell_params)

get_job_interface(job_params)

galaxy.jobs.runners.util.cli.split_params(params)

Subpackages

• galaxy.jobs.runners.util.cli.job package
  • Submodules
  • galaxy.jobs.runners.util.cli.job.slurm module
  • galaxy.jobs.runners.util.cli.job.slurm_torque module
  • galaxy.jobs.runners.util.cli.job.torque module
• galaxy.jobs.runners.util.cli.shell package
  • Submodules
  • galaxy.jobs.runners.util.cli.shell.local module
  • galaxy.jobs.runners.util.cli.shell.rsh module

Submodules

galaxy.jobs.runners.util.cli.factory module

galaxy.jobs.runners.util.cli.factory.build_cli_interface()

galaxy.jobs.runners.util.cli.factory.get_shell(params)