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Source code for galaxy.model.view
"""
Galaxy sql view models
"""
from sqlalchemy import Integer
from sqlalchemy.orm import registry
from sqlalchemy.sql import (
column,
text,
)
from galaxy.model.view.utils import View
[docs]class HistoryDatasetCollectionJobStateSummary(View):
name = "collection_job_state_summary_view"
aggregate_state_query = """
SELECT
hdca_id,
SUM(CASE WHEN state = 'new' THEN 1 ELSE 0 END) AS new,
SUM(CASE WHEN state = 'resubmitted' THEN 1 ELSE 0 END) AS resubmitted,
SUM(CASE WHEN state = 'waiting' THEN 1 ELSE 0 END) AS waiting,
SUM(CASE WHEN state = 'queued' THEN 1 ELSE 0 END) AS queued,
SUM(CASE WHEN state = 'running' THEN 1 ELSE 0 END) AS running,
SUM(CASE WHEN state = 'ok' THEN 1 ELSE 0 END) AS ok,
SUM(CASE WHEN state = 'error' THEN 1 ELSE 0 END) AS error,
SUM(CASE WHEN state = 'failed' THEN 1 ELSE 0 END) AS failed,
SUM(CASE WHEN state = 'paused' THEN 1 ELSE 0 END) AS paused,
SUM(CASE WHEN state = 'deleted' THEN 1 ELSE 0 END) AS deleted,
SUM(CASE WHEN state = 'deleted_new' THEN 1 ELSE 0 END) AS deleted_new,
SUM(CASE WHEN state = 'upload' THEN 1 ELSE 0 END) AS upload,
SUM(CASE WHEN job_id IS NOT NULL THEN 1 ELSE 0 END) AS all_jobs
FROM (
SELECT hdca.id AS hdca_id, job.id AS job_id, job.state as state
FROM history_dataset_collection_association hdca
LEFT JOIN implicit_collection_jobs icj
ON icj.id = hdca.implicit_collection_jobs_id
LEFT JOIN implicit_collection_jobs_job_association icjja
ON icj.id = icjja.implicit_collection_jobs_id
LEFT JOIN job
ON icjja.job_id = job.id
UNION
SELECT hdca.id AS hdca_id, job.id AS job_id, job.state AS state
FROM history_dataset_collection_association hdca
LEFT JOIN job
ON hdca.job_id = job.id
) jobstates
GROUP BY jobstates.hdca_id
"""
__view__ = text(aggregate_state_query).columns(
column("hdca_id", Integer),
column("new", Integer),
column("resubmitted", Integer),
column("waiting", Integer),
column("queued", Integer),
column("running", Integer),
column("ok", Integer),
column("error", Integer),
column("failed", Integer),
column("paused", Integer),
column("deleted", Integer),
column("deleted_new", Integer),
column("upload", Integer),
column("all_jobs", Integer),
)
pkeys = {"hdca_id"}
__table__ = View._make_table(name, __view__, pkeys)
mapper_registry = registry()
mapper_registry.map_imperatively(
HistoryDatasetCollectionJobStateSummary, HistoryDatasetCollectionJobStateSummary.__table__
)