Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for tool_shed.test.functional.test_0310_hg_api_features

import logging
import os

from ..base.twilltestcase import common, ShedTwillTestCase

log = logging.getLogger(__name__)

repository_name = 'filtering_0310'
repository_description = "Galaxy's filtering tool for test 0310"
repository_long_description = "Long description of Galaxy's filtering tool for test 0310"

category_name = 'Test 0310 - HTTP Repo features'
category_description = 'Test 0310 for verifying the tool shed http interface to mercurial.'

'''
1. Create a repository.
2. Clone the repository to a local path.
'''


[docs]class TestHgWebFeatures(ShedTwillTestCase): '''Test http mercurial interface.'''
[docs] def test_0000_initiate_users(self): """Create necessary user accounts and login as an admin user.""" self.login(email=common.test_user_1_email, username=common.test_user_1_name) test_user_1 = self.test_db_util.get_user(common.test_user_1_email) assert test_user_1 is not None, f'Problem retrieving user with email {common.test_user_1_email} from the database' self.test_db_util.get_private_role(test_user_1) self.login(email=common.test_user_2_email, username=common.test_user_2_name) test_user_2 = self.test_db_util.get_user(common.test_user_2_email) assert test_user_2 is not None, f'Problem retrieving user with email {common.test_user_2_email} from the database' self.test_db_util.get_private_role(test_user_2) self.login(email=common.admin_email, username=common.admin_username) admin_user = self.test_db_util.get_user(common.admin_email) assert admin_user is not None, f'Problem retrieving user with email {common.admin_email} from the database' self.test_db_util.get_private_role(admin_user)
[docs] def test_0005_create_filtering_repository(self): '''Create and populate the filtering_0310 repository.''' ''' We are at step 1 - Create a repository. Create and populate the filtering_0310 repository. ''' category = self.create_category(name=category_name, description=category_description) self.login(email=common.test_user_1_email, username=common.test_user_1_name) repository = self.get_or_create_repository(name=repository_name, description=repository_description, long_description=repository_long_description, owner=common.test_user_1_name, category_id=self.security.encode_id(category.id), strings_displayed=[]) self.upload_file(repository, filename='filtering/filtering_1.1.0.tar', filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=True, commit_message="Uploaded filtering 1.1.0.", strings_displayed=[], strings_not_displayed=[]) self.upload_file(repository, filename='filtering/filtering_test_data.tar', filepath=None, valid_tools_only=True, uncompress_file=True, remove_repo_files_not_in_tar=False, commit_message="Uploaded filtering test data.", strings_displayed=[], strings_not_displayed=[])
[docs] def test_0010_clone(self): '''Clone the repository to a local path.''' ''' We are at step 2 - Clone the repository to a local path. The repository should have the following files: filtering.py filtering.xml test-data/ test-data/1.bed test-data/7.bed test-data/filter1_in3.sam test-data/filter1_inbad.bed test-data/filter1_test1.bed test-data/filter1_test2.bed test-data/filter1_test3.sam test-data/filter1_test4.bed ''' repository = self.test_db_util.get_repository_by_name_and_owner(repository_name, common.test_user_1_name) clone_path = self.generate_temp_path('test_0310', additional_paths=['filtering_0310', 'user2']) self.clone_repository(repository, clone_path) files_in_repository = os.listdir(clone_path) assert 'filtering.py' in files_in_repository, 'File not found in repository: filtering.py'