Source code for tool_shed.webapp.model.migrate.versions.0020_add_repository_type_column

"""Migration script to add the type column to the repository table."""

import logging
import sys

from sqlalchemy import Column, MetaData, Table

# Need our custom types, but don't import anything else from model
from galaxy.model.custom_types import TrimmedString

log = logging.getLogger(__name__)
log.setLevel(logging.DEBUG)
handler = logging.StreamHandler(sys.stdout)
format = "%(name)s %(levelname)s %(asctime)s %(message)s"
formatter = logging.Formatter(format)
handler.setFormatter(formatter)
log.addHandler(handler)

metadata = MetaData()


[docs]def upgrade(migrate_engine):
    print(__doc__)
    metadata.bind = migrate_engine
    metadata.reflect()
    Repository_table = Table("repository", metadata, autoload=True)
    c = Column("type", TrimmedString(255), index=True)
    try:
        # Create
        c.create(Repository_table, index_name="ix_repository_type")
        assert c is Repository_table.c.type
    except Exception:
        log.exception("Adding type column to the repository table failed.")
    # Update the type column to have the default unrestricted value.
    cmd = "UPDATE repository SET type = 'unrestricted'"
    migrate_engine.execute(cmd)


[docs]def downgrade(migrate_engine):
    metadata.bind = migrate_engine
    metadata.reflect()
    # Drop type column from repository table.
    Repository_table = Table("repository", metadata, autoload=True)
    try:
        Repository_table.c.type.drop()
    except Exception:
        log.exception("Dropping column type from the repository table failed.")