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Source code for galaxy.tool_util.deps.brew_util

""" brew_exts defines generic extensions to Homebrew this file
builds on those abstraction and provides Galaxy specific functionality
not useful to the brew external commands.
from ..deps import brew_exts

DEFAULT_TAP = "homebrew/science"

[docs]class HomebrewRecipe:
[docs] def __init__(self, recipe, version, tap): self.recipe = recipe self.version = version self.tap = tap
[docs]def requirements_to_recipes(requirements): return filter(None, map(requirement_to_recipe, requirements))
[docs]def requirement_to_recipe(requirement): if requirement.type != "package": return None # TOOD: Allow requirements to annotate optionalbrew specific # adaptions. recipe_name = requirement.name recipe_version = requirement.version return HomebrewRecipe(recipe_name, recipe_version, tap=DEFAULT_TAP)
[docs]def requirements_to_recipe_contexts(requirements, brew_context): def to_recipe_context(homebrew_recipe): return brew_exts.RecipeContext( homebrew_recipe.recipe, homebrew_recipe.version, brew_context ) return map(to_recipe_context, requirements_to_recipes(requirements))