Warning

This document is for an in-development version of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for galaxy.security

"""
Galaxy Security

"""
from galaxy.util.bunch import Bunch


[docs]class Action:
[docs] def __init__(self, action, description, model): self.action = action self.description = description self.model = model
[docs]class RBACAgent: """Class that handles galaxy security""" permitted_actions = Bunch( DATASET_MANAGE_PERMISSIONS=Action("manage permissions", "Users having associated role can manage the roles associated with permissions on this dataset.", "grant"), DATASET_ACCESS=Action("access", "Users having associated role can import this dataset into their history for analysis.", "restrict"), LIBRARY_ACCESS=Action("access library", "Restrict access to this library to only users having associated role", "restrict"), LIBRARY_ADD=Action("add library item", "Users having associated role can add library items to this library item", "grant"), LIBRARY_MODIFY=Action("modify library item", "Users having associated role can modify this library item", "grant"), LIBRARY_MANAGE=Action("manage library permissions", "Users having associated role can manage roles associated with permissions on this library item", "grant") )
[docs] def get_action(self, name, default=None): """Get a permitted action by its dict key or action name""" for k, v in self.permitted_actions.items(): if k == name or v.action == name: return v return default
[docs] def get_actions(self): """Get all permitted actions as a list of Action objects""" return list(self.permitted_actions.__dict__.values())
[docs] def get_item_actions(self, action, item): raise Exception('No valid method of retrieving action ({}) for item {}.'.format(action, item))
[docs] def guess_derived_permissions_for_datasets(self, datasets=[]): raise Exception("Unimplemented Method")
[docs] def can_access_dataset(self, roles, dataset): raise Exception("Unimplemented Method")
[docs] def can_manage_dataset(self, roles, dataset): raise Exception("Unimplemented Method")
[docs] def can_access_library(self, roles, library): raise Exception("Unimplemented Method")
[docs] def can_add_library_item(self, roles, item): raise Exception("Unimplemented Method")
[docs] def can_modify_library_item(self, roles, item): raise Exception("Unimplemented Method")
[docs] def can_manage_library_item(self, roles, item): raise Exception("Unimplemented Method")
[docs] def associate_components(self, **kwd): raise Exception('No valid method of associating provided components: %s' % kwd)
[docs] def create_private_user_role(self, user): raise Exception("Unimplemented Method")
[docs] def get_private_user_role(self, user): raise Exception("Unimplemented Method")
[docs] def user_set_default_permissions(self, user, permissions={}, history=False, dataset=False): raise Exception("Unimplemented Method")
[docs] def history_set_default_permissions(self, history, permissions=None, dataset=False, bypass_manage_permission=False): raise Exception("Unimplemented Method")
[docs] def set_all_dataset_permissions(self, dataset, permissions, new=False): raise Exception("Unimplemented Method")
[docs] def set_dataset_permission(self, dataset, permission): raise Exception("Unimplemented Method")
[docs] def set_all_library_permissions(self, trans, dataset, permissions): raise Exception("Unimplemented Method")
[docs] def set_library_item_permission(self, library_item, permission): raise Exception("Unimplemented Method")
[docs] def library_is_public(self, library): raise Exception("Unimplemented Method")
[docs] def make_library_public(self, library): raise Exception("Unimplemented Method")
[docs] def get_accessible_libraries(self, trans, user): raise Exception("Unimplemented Method")
[docs] def get_permitted_libraries(self, trans, user, actions): raise Exception("Unimplemented Method")
[docs] def folder_is_public(self, library): raise Exception("Unimplemented Method")
[docs] def make_folder_public(self, folder, count=0): raise Exception("Unimplemented Method")
[docs] def dataset_is_public(self, dataset): raise Exception("Unimplemented Method")
[docs] def make_dataset_public(self, dataset): raise Exception("Unimplemented Method")
[docs] def get_permissions(self, library_dataset): raise Exception("Unimplemented Method")
[docs] def get_all_roles(self, trans, cntrller): raise Exception("Unimplemented Method")
[docs] def get_legitimate_roles(self, trans, item, cntrller): raise Exception("Unimplemented Method")
[docs] def derive_roles_from_access(self, trans, item_id, cntrller, library=False, **kwd): raise Exception("Unimplemented Method")
[docs] def get_component_associations(self, **kwd): raise Exception("Unimplemented Method")
[docs] def components_are_associated(self, **kwd): return bool(self.get_component_associations(**kwd))
[docs] def convert_permitted_action_strings(self, permitted_action_strings): """ When getting permitted actions from an untrusted source like a form, ensure that they match our actual permitted actions. """ return [_ for _ in [self.permitted_actions.get(action_string) for action_string in permitted_action_strings] if _ is not None]
[docs]def get_permitted_actions(filter=None): '''Utility method to return a subset of RBACAgent's permitted actions''' if filter is None: return RBACAgent.permitted_actions tmp_bunch = Bunch() [tmp_bunch.__dict__.__setitem__(k, v) for k, v in RBACAgent.permitted_actions.items() if k.startswith(filter)] return tmp_bunch