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January 2020 Galaxy Release (v 20.01)¶
Highlights¶
- Workflow Executions Menu
- This menu can be reached from the User menu -> Workflow Invocations and lists your recent Workflow executions, their status and links to the Workflow Editor and the History with the results of the Workflow run.
- Galay Markdown Pages and Workflow Reports as PDF
- An additional link has been added to Galaxy Markdown Pages and Workflow reports that exports your document as a standalone PDF.
- Screenreader-friendly Navigation
- The top menu and the Workflow Editor have been improved for easier navigation using Screenreaders and the Keyboard. Thanks goes to @WilliamHolden
- Email-notification for completed jobs
- You can now select to be notified by email when a tool run has finished. Thanks goes to @astrovsky01
New Visualizations¶
- Add data dialog input element to client form parameter list Pull Request 8774
- Wrap SQL statement in a text() function as required by sqlalchemy (thanks to @kaukrise). Pull Request 9216
- Ensure visible overflow on navbar container (thanks to @kaukrise). Pull Request 9217
New Datatypes¶
- Datatypes for MassSpec DIA dlib,elib (thanks to @jj-umn). Pull Request 8657
- Add bus as binary, remove extra datatype (thanks to @astrovsky01). Pull Request 8705
- remove dada2_derep data type (thanks to @bernt-matthias). Pull Request 8902
- Add new GROMACS datatypes: ndx, xvg, edr (thanks to @simonbray). Pull Request 8964
- add gff3.gz and gff3.bz2 datatypes (thanks to @FredericBGA). Pull Request 8967
- Make mol2 visible (thanks to @galaxyproject). Pull Request 8995
- Add a datatype subclass for CAT (Contig Annotation Tool) (thanks to @jj-umn). Pull Request 9087
- Fix cool sniffing on python3 Pull Request 9153
- Allow tabular.gz / add embl to uploadable formats Pull Request 9293
Builtin Tool Updates¶
- Upgrade askomics interactive tool (thanks to @xgaia). Pull Request 8517
- Remove collection ID character restriction from ‘Relabel collection from file’ tool (thanks to @brinkmanlab). Pull Request 8571
- Allow space, dot and comma in relabel identifier tool Pull Request 8757
- Fix script shebangs (thanks to @nsoranzo). Pull Request 8888
- grouping: strip newlines (thanks to @bernt-matthias). Pull Request 8953
- Allow admins to import tools/workflows from paths. Pull Request 9003
- Add requirements to interval_to_bed_converter.xml Pull Request 9041
- Move sam_pileup to GALAXY_LIB_TOOLS_VERSIONED Pull Request 9320
- Add requirements, fix legacy tools and move them out of GALAXY_LIB_TOOLS_UNVERSIONED Pull Request 9336
- Add requirements to (almost) all converters, profile and minor fixes Pull Request 9345
- Fix version in which
sam_pileup
was fixed (thanks to @nsoranzo). Pull Request 9350 - Expunge tool shed repository objects, prevents ParentInstanceDetachedError Pull Request 9354
- Remove GenomeSpace tools, OpenID, UI and requirements (thanks to @nsoranzo). Pull Request 9363
- Fix maf tools Pull Request 9393
- XML fix for joiner.xml. Pull Request 9399
Release Notes¶
Please see the full release notes for more details.
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Thanks for using Galaxy!