Source code for galaxy.webapps.tool_shed.util.shed_statistics

from time import gmtime
from time import strftime


[docs]class ShedCounter(object):
[docs]    def __init__(self, model):
        # TODO: Enhance the ShedCounter to retrieve information from the db instead of displaying what's currently in memory.
        self.model = model
        self.custom_datatypes = 0
        self.generation_time = strftime("%b %d, %Y", gmtime())
        self.deleted_repositories = 0
        self.deprecated_repositories = 0
        self.invalid_versions_of_tools = 0
        self.repositories = 0
        self.total_clones = 0
        self.valid_versions_of_tools = 0
        self.unique_owners = 0
        self.unique_valid_tools = 0
        self.workflows = 0
        self.generate_statistics()

    @property
    def sa_session(self):
        """Returns a SQLAlchemy session"""
        return self.model.context

[docs]    def generate_statistics(self):
        self.custom_datatypes = 0
        self.deleted_repositories = 0
        self.deprecated_repositories = 0
        self.invalid_versions_of_tools = 0
        self.repositories = 0
        self.total_clones = 0
        self.unique_owners = 0
        self.valid_versions_of_tools = 0
        self.unique_valid_tools = 0
        self.workflows = 0
        unique_user_ids = []
        for repository in self.sa_session.query(self.model.Repository):
            self.repositories += 1
            self.total_clones += repository.times_downloaded
            is_deleted = repository.deleted
            if is_deleted:
                self.deleted_repositories += 1
            else:
                if repository.deprecated:
                    self.deprecated_repositories += 1
                if repository.user_id not in unique_user_ids:
                    self.unique_owners += 1
                    unique_user_ids.append(repository.user_id)
                processed_datatypes = []
                processed_guids = []
                processed_invalid_tool_configs = []
                processed_relative_workflow_paths = []
                processed_tool_ids = []
                # A repository's metadata_revisions are those that ignore the value of the
                # repository_metadata.downloadable column.
                for metadata_revision in repository.metadata_revisions:
                    metadata = metadata_revision.metadata
                    if 'tools' in metadata:
                        tool_dicts = metadata['tools']
                        for tool_dict in tool_dicts:
                            if 'guid' in tool_dict:
                                guid = tool_dict['guid']
                                if guid not in processed_guids:
                                    self.valid_versions_of_tools += 1
                                    processed_guids.append(guid)
                            if 'id' in tool_dict:
                                tool_id = tool_dict['id']
                                if tool_id not in processed_tool_ids:
                                    self.unique_valid_tools += 1
                                    processed_tool_ids.append(tool_id)
                    if 'invalid_tools' in metadata:
                        invalid_tool_configs = metadata['invalid_tools']
                        for invalid_tool_config in invalid_tool_configs:
                            if invalid_tool_config not in processed_invalid_tool_configs:
                                self.invalid_versions_of_tools += 1
                                processed_invalid_tool_configs.append(invalid_tool_config)
                    if 'datatypes' in metadata:
                        datatypes = metadata['datatypes']
                        for datatypes_dict in datatypes:
                            if 'extension' in datatypes_dict:
                                extension = datatypes_dict['extension']
                                if extension not in processed_datatypes:
                                    self.custom_datatypes += 1
                                    processed_datatypes.append(extension)
                    if 'workflows' in metadata:
                        workflows = metadata['workflows']
                        for workflow_tup in workflows:
                            relative_path, exported_workflow_dict = workflow_tup
                            if relative_path not in processed_relative_workflow_paths:
                                self.workflows += 1
                                processed_relative_workflow_paths.append(relative_path)
        self.generation_time = strftime("%b %d, %Y", gmtime())