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galaxy.tool_shed.galaxy_install.metadata package

Submodules

galaxy.tool_shed.galaxy_install.metadata.installed_repository_metadata_manager module

class galaxy.tool_shed.galaxy_install.metadata.installed_repository_metadata_manager.InstalledRepositoryMetadataManager(app, tpm=None, repository=None, changeset_revision=None, repository_clone_url=None, shed_config_dict=None, relative_install_dir=None, repository_files_dir=None, resetting_all_metadata_on_repository=False, updating_installed_repository=False, persist=False, metadata_dict=None)

Bases: MetadataGenerator

__init__(app, tpm=None, repository=None, changeset_revision=None, repository_clone_url=None, shed_config_dict=None, relative_install_dir=None, repository_files_dir=None, resetting_all_metadata_on_repository=False, updating_installed_repository=False, persist=False, metadata_dict=None)

build_repository_ids_select_field(name='repository_ids', multiple=True, display='checkboxes')

Generate the current list of repositories for resetting metadata.

get_query_for_setting_metadata_on_repositories(order=True)

Return a query containing repositories for resetting metadata. The order parameter is used for displaying the list of repositories ordered alphabetically for display on a page. When called from the Galaxy API, order is False.

get_repository_tools_tups()

Return a list of tuples of the form (relative_path, guid, tool) for each tool defined in the received tool shed repository metadata.

reset_all_metadata_on_installed_repository()

Reset all metadata on a single tool shed repository installed into a Galaxy instance.

reset_metadata_on_selected_repositories(user, **kwd)

Inspect the repository changelog to reset metadata for all appropriate changeset revisions. This method is called from both Galaxy and the Tool Shed.

set_repository(repository)

tool_shed_from_repository_clone_url()

Given a repository clone URL, return the tool shed that contains the repository.

update_in_shed_tool_config()

A tool shed repository is being updated so change the shed_tool_conf file. Parse the config file to generate the entire list of config_elems instead of using the in-memory list.