from ..base.twilltestcase import (
common,
ShedTwillTestCase,
)
repository_name = "bed_to_gff_0130"
repository_description = "Converter: BED to GFF"
repository_long_description = "Convert bed to gff"
category_name = "Test 0130 Datatype Converters"
category_description = "Test 0130 Datatype Converters"
"""
1) Create a populate the bed_to_gff_converter repository
2) Visit the manage repository page and make sure there is the appropriate valid too and datatype
3) Visit the view tool metadata page and make sure that "Display in tool panel" is False
"""
[docs]class TestDatatypeConverters(ShedTwillTestCase):
"""Test features related to datatype converters."""
[docs] def test_0000_initiate_users(self):
"""Create necessary user accounts."""
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
test_user_1 = self.test_db_util.get_user(common.test_user_1_email)
assert (
test_user_1 is not None
), f"Problem retrieving user with email {common.test_user_1_email} from the database"
self.test_db_util.get_private_role(test_user_1)
self.login(email=common.admin_email, username=common.admin_username)
admin_user = self.test_db_util.get_user(common.admin_email)
assert admin_user is not None, f"Problem retrieving user with email {common.admin_email} from the database"
self.test_db_util.get_private_role(admin_user)
[docs] def test_0005_create_bed_to_gff_repository(self):
"""Create and populate bed_to_gff_0130.
We are at step 1 - Create and populate the bed_to_gff_0130 repository.
Create the bed_to_gff_0130 repository and populate it with the files needed for this test.
"""
category = self.create_category(name=category_name, description=category_description)
self.login(email=common.test_user_1_email, username=common.test_user_1_name)
# Create a repository named bed_to_gff_0130 owned by user1.
repository = self.get_or_create_repository(
name=repository_name,
description=repository_description,
long_description=repository_long_description,
owner=common.test_user_1_name,
category_id=self.security.encode_id(category.id),
strings_displayed=[],
)
# Upload bed_to_gff_converter.tar to the repository.
self.upload_file(
repository,
filename="bed_to_gff_converter/bed_to_gff_converter.tar",
filepath=None,
valid_tools_only=True,
uncompress_file=False,
remove_repo_files_not_in_tar=False,
commit_message="Uploaded bed_to_gff_converter.tar.",
strings_displayed=[],
strings_not_displayed=[],
)