Source code for galaxy_test.api.test_history_contents_provenance

from galaxy_test.base.populators import (
    DatasetPopulator,
    skip_without_tool,
)
from ._framework import ApiTestCase

MINIMAL_PROV_KEYS = ("id", "uuid")
OTHER_PROV_KEYS = ("job_id", "stdout", "stderr", "parameters", "tool_id")
ALL_PROV_KEYS = MINIMAL_PROV_KEYS + OTHER_PROV_KEYS


[docs]class TestProvenance(ApiTestCase):
[docs] def setUp(self): super().setUp() self.dataset_populator = DatasetPopulator(self.galaxy_interactor)
[docs] @skip_without_tool("cat1") def test_get_prov(self): history_id = self.dataset_populator.new_history() new_dataset1_id = self.dataset_populator.new_dataset(history_id, content="for prov")["id"] inputs = { "input1": {"src": "hda", "id": new_dataset1_id}, } run_response = self.dataset_populator.run_tool("cat1", inputs=inputs, history_id=history_id) output_hda_id = run_response["outputs"][0]["id"] prov_response = self._get(f"histories/{history_id}/contents/{output_hda_id}/provenance") self._assert_status_code_is(prov_response, 200) prov = prov_response.json() # Check the top-level provenance info self._assert_has_keys(prov, *ALL_PROV_KEYS) # Check that the provenance info is not recursive when `follow` is not specified prov_input1 = prov["parameters"]["input1"] self._assert_has_keys(prov_input1, *MINIMAL_PROV_KEYS) self._assert_not_has_keys(prov_input1, *OTHER_PROV_KEYS) # Check that the provenance info is also not recursive when `follow=False` prov_response = self._get( f"histories/{history_id}/contents/{output_hda_id}/provenance", {"follow": False}, ) self._assert_status_code_is(prov_response, 200) prov2 = prov_response.json() assert prov == prov2 # Check that the provenance info is recursive when `follow=True` prov_response = self._get( f"histories/{history_id}/contents/{output_hda_id}/provenance", {"follow": True}, ) self._assert_status_code_is(prov_response, 200) prov = prov_response.json() self._assert_has_keys(prov, *ALL_PROV_KEYS) prov_input1 = prov["parameters"]["input1"] self._assert_has_keys(prov_input1, *ALL_PROV_KEYS)