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May 2019 Galaxy Release (v 19.05)¶
Highlights¶
- User Facing Release Notes
Galaxy releases now include “user facing” release notes, you are reading the traditional release notes which have always been relatively admin and developer oriented but will likely be even more so now. Features such as favoriting tools, improved workflow editor feedback, and an exciting new cellxgene GIE may have been featured in these release notes in the past but are now featured in the user release notes instead. A huge thanks to @hexylena for getting the ball rolling on this initiative.
Check out the 19.05 user release notes.
- Login and Registration Rewrite
The march toward replacing templated backend generated HTML with modern, reactive components accelerated in Galaxy 19.05. Galaxy’s login, logout, and registration pages were replaced with VueJS components. Support for OIDC login options was added and certain deprecated OpenID login options were removed. This release contains many other client code enhancements including a new client initialization pipeline, ESLint based linting, and greatly optimized initial dynamic loading of bundles.
- Improvements to Workflow Expressivity
In 19.01, non-data connections were added to the workflow editor in the form of explicit, typed, non-data inputs to workflows. This idea has been generalized in 19.05 and tool can now produce non-data outputs and a new class of tools called “Expression” tools has been added to make this especially easy. The Format 2 workflow format is now importable by default and admin-only extensions even allow embedding tool definitions directly into workflows. Many thanks to @mvdbeek for pushing this effort.
Get Galaxy¶
The code lives at GitHub and you should have Git to obtain it.
- To get a new Galaxy repository run:
$ git clone -b release_19.05 https://github.com/galaxyproject/galaxy.git
- To update an existing Galaxy repository run:
$ git fetch origin && git checkout release_19.05 && git pull --ff-only origin release_19.05
See the community hub for additional details regarding the source code locations.
Release Notes¶
Enhancements¶
Implement the ability to favorite tools. Pull Request 7209
Add data dialog option to tool form data selector. Pull Request 7553, Pull Request 7460
Many workflow editor connection fixes and enhancements making them more correct, accessible, and transparent (with huge thanks to @mvdbeek). Pull Request 7466, Pull Request 7435, Pull Request 7972, Pull Request 7979, Pull Request 7642, Pull Request 7989, Pull Request 7254
Add a Galaxy IE for cellxgene. Pull Request 7268
Implement expression tools and non-data tool outputs (with thanks to @mvdbeek). Pull Request 7556, Pull Request 7796, Pull Request 7797, Pull Request 7944
Add Galaxy cloud runner support (thanks to @nuwang). Pull Request 7226
More robust task messaging (thanks to @mvdbeek). Pull Request 7548
Allow implicit conversion for input collection parameters (thanks to @mvdbeek). Pull Request 7683
Allow import of “Format 2” workflows by default. Pull Request 7659
Decompose Galaxy into Python libraries in-tree. Pull Request 7524
Rewrite and generalize History import and export - dozens of fixes, support for collections, Python library support, etc.. Pull Request 7367, Pull Request 7214, Pull Request 7366, Pull Request 7369, Pull Request 7370, Pull Request 7358, Pull Request 7505, Pull Request 7507, Pull Request 7363, Pull Request 7193, Pull Request 7192, Pull Request 7537, Pull Request 7540, Pull Request 7684, Pull Request 7704
User facing release notes (thanks to @hexylena). Pull Request 7527
Implement dataset source and hash tracking. Pull Request 7487, Pull Request 4659, Pull Request 7549
Custos integration for AuthNZ (thanks to @machristie). Pull Request 7195
Flush out API support for AuthNZ and CloudAuthz Pull Request 7598, Pull Request 7609, Pull Request 7592, Pull Request 7597, Pull Request 7639
Update to PSA 3.1 and support login with Globus identity. Pull Request 7463
Swap from ‘slug.js’ to ‘slugify.js’ - saving 10 MB in client bundles. Pull Request 7538
Update all client dependencies - including to Backbone 1.4, Bootstrap 4.2, Vue 2.6. Pull Request 7544, Pull Request 7637
Allow admins to import dynamic JSON-based tools. Pull Request 7545
Implement environment modules mapping files (thanks to @FredericBGA). Pull Request 7398
Allow tool testing of multiple files within a zip output (thanks to @thermokarst). Pull Request 7400
Add datatype converters between tabular and CSV. Pull Request 7246
Add Azure and GCP support for ObjectStore Cloud backend. Pull Request 7272
Add a validator that ensure metadata value is on a range. (thanks to @fmareuil). Pull Request 7288
Fix post job actions for “Database Operation” tools, implement
change_datatype
for collection output (thanks to @mvdbeek). Pull Request 7480Implement and enforce ESLint linting of the entire client code base. Pull Request 7202, Pull Request 7860
Multiple enhancements to the LSF cli-plugin job runner - support out of memory handling, project specification, and Spectrum LSF. (thanks to @pcm32 and @selten). Pull Request 6866, Pull Request 7581, Pull Request 7486
Drop support for Python 3.4 and officially support Python 3.5 or greater. (thanks to @nsoranzo). Pull Request 7291
Batch bulk hide and delete operations when multiple selected. Pull Request 5495
Implement client initialization pipeline. Pull Request 7117
Allow storing objects in the object store by UUID. Pull Request 7154, Pull Request 7650
Replace login and registration mako templates with VueJS components. Pull Request 6621, Pull Request 7047, Pull Request 7329, Pull Request 7442, Pull Request 7756, Pull Request 7347
Track messages generated tool stdio tags in the database instead of just appending them to tool standard error. Structured UI in reporting also. (with help from @bernt-matthias) Pull Request 7095
Track job script stdout and stderr separately from the tool’s stdout and stderr in the database. Pull Request 7095
Support loading/using tools that are not in the install database (with help from @mvdbeek). Pull Request 7316, Pull Request 8021
Git providers error reporting plugins (thanks to @selten). Pull Request 7485
Rename
_future_expose_api
toexpose_api
andexpose_api
tolegacy_expose_api
(thanks to @mvdbeek). Pull Request 7743Add
mtx
datatype (thanks to @bebatut and @nsoranzo). Pull Request 7569, Pull Request 7702, Pull Request 7717Add
geojson
datatype (thanks to @bgruening). Pull Request 7773Add shapefile (
shp
) datatype (thanks to @bgruening). Pull Request 7819Add
imgt.json
datatype for IMGT immune system libraries (thanks to @jj-umn). Pull Request 7587Add microarrays data types
gpr
andgal
(thanks to @bensellak). Pull Request 7457Add
spaln
database type (thanks to @pvanheus). Pull Request 7718Redefine
cel
datatype (thanks to @bensellak). Pull Request 7514Run most tests formerly ran on Travis on CircleCI (with help from @nsoranzo). Pull Request 7424, Pull Request 7573, Pull Request 7451, Pull Request 7207, Pull Request 7539, Pull Request 7574
Toolshed API enhancements. Pull Request 6652
Kubernetes job runner integration test and enhancements (thanks to @mvdbeek). Pull Request 6958
Implement sniffing of datatypes for library datasets. Pull Request 7379
Rewrite tool output metadata collection - now portable and more correct, tested, and documented. Pull Request 7470, Pull Request 7459, Pull Request 7156 Pull Request 7483, Pull Request 7158, Pull Request 7213, Pull Request 7694, Pull Request 7596, Pull Request 7186, Pull Request 7471
Add
python
toCount1
tool requirements (thanks to @mvdbeek). Pull Request 7185Fixes and enhancements for the grouping1 tool - including not removing empty cells at the begin/start of lines (thanks to @bernt-matthias and @mvdbeek). Pull Request 7205, Pull Request 7844
Workflow editor accessibility fixes. Pull Request 7750
Python dependency updates and documentation fixes (thanks to @nsoranzo). Pull Request 7215, Pull Request 7247, Pull Request 7285, Pull Request 7740
Remove requirement pin on specific Sphinx version (thanks to @nsoranzo). Pull Request 7365
Drop conditional pygmentz requirement (autoinstalled as necessary), minor formatting in conditional-reqs Pull Request 7219
Fix spacing between checkbox and buttons in history sharing view. Pull Request 7222
Use regular font-size and styling in uploader. Pull Request 7232
Remove underline from history datasets. Pull Request 7235
Add headless testing option for Selenium tests. Pull Request 7287
Build tool XML schema docs using
sphinx_markdown_tables
(thanks to @nsoranzo). Pull Request 7313Refactor dataset controller to reuse input validation checks between get/set. Pull Request 7322
Add web server documentation notes about
Range
support (thanks to @pvanheus and @nsoranzo). Pull Request 7323, Pull Request 7334Fall back to binary comparison if BAM conversion fails during tool tests (thanks to @bernt-matthias). Pull Request 7342
Update
area
issue/PR labels (thanks to @nsoranzo). Pull Request 7344Remove deprecated
collect_outputs_from
configuration option. Pull Request 7144Remove
ToolsController._rerun_tool()
API method (thanks to @nsoranzo). Pull Request 7345Refactor
item_attrs.py
for reuse without mixin inheritance. Pull Request 7346Add
--force_path_paste
argument to tool test verify script. Pull Request 7356Separate client node version requirement into individual dotfile for reuse. Pull Request 7357
Improve tool testing for counting datasets in paired collections (thanks to @bernt-matthias). Pull Request 7359
Do not default to
DEV_WHEELS=1
if nogit
is found (thanks to @ic4f). Pull Request 7371Restore gray scale difference between panel vs portlet background color for contrast. Pull Request 7387
Specify exceptions more precisely in user API controller. Pull Request 7397
Automatically set
cookie_path
usingurl_for()
. Pull Request 7404Allow configuration location of user preferences extra configuration (thanks to @hexylena). Pull Request 7428
Add hover styling to target tool in tool panel (thanks to @hexylena). Pull Request 7437
Update Docker testing image (thanks to @mvdbeek). Pull Request 7439, Pull Request 7187
Remove unused code (thanks to @nsoranzo). Pull Request 7445
Note cannot import name _remove_dead_weakref error and solution (thanks to @pvanheus). Pull Request 7461
Add option to pass in individual globs to client unit test watcher Pull Request 7477
Update of tours overview according to #5860 (thanks to @selten). Pull Request 7478
Add new metadata and data table tool validators (thanks to @bernt-matthias). Pull Request 7500
Updated documentation in
admin/scaling.md
for Systemd (thanks to @ooobik). Pull Request 7515Replace backbone tagging views with VueJs components. Pull Request 7516
Eliminate import dependency of datatypes on galaxy.web (
url_for
). Pull Request 7521Static plugin staging as a part of client build instead of startup. Pull Request 7532
Implement dockerized variant of
update.sh
for project Python dependencies. Pull Request 7546Refactor XSD output elements to share common output attributes. Pull Request 7555
Improve linking between job conf handler assignment and documentation (thanks to @hexylena). Pull Request 7558
Refactor
galaxy.web.security
intogalaxy.security.idencoding
. Pull Request 7560Move the ‘create new history’ out of the history context menu Pull Request 7565, Pull Request 7606
Improve workflow cog menu user interface. Pull Request 7594, Pull Request 7858
Make
galaxy.model.dataset_collections
more usable outside manager context. Pull Request 7595Webpack bundle overhaul and initial dynamic loading. Pull Request 7605
Don’t un-hide mapped-over outputs when job fails (thanks to @mvdbeek). Pull Request 7630
Continue gracefully in set_meta if unable to count number of dataset lines. Pull Request 7641
Implement functional dict-ifiable tool outputs and error detection. Pull Request 7651
Refactor
IntegrationTestCase
to allow integration test functions. Pull Request 7657Drop .pyc files before attempting to migrate (thanks to @mvdbeek). Pull Request 7677
Add docs to OIDC backends configuration file. Pull Request 7691
Update
CITATION
to latest Galaxy update paper (thanks to @nsoranzo). Pull Request 7698Update pull request procedures to exempt notes, changelogs, and packages from mandatory review. Pull Request 7706
Update procedures to relax the vote requirement for fixing bugs in releases Pull Request 7707
Improve error message if GFF file is missing attribute col (thanks to @nsoranzo). Pull Request 7708
Add hostname to task message queues (thanks to @mvdbeek). Pull Request 7712
OIDC login buttons based on configuration (thanks to @machristie). Pull Request 7720
Enable the selection of library datasets in the tool form Pull Request 7746
Replace
enable_beta_export_format2_default
withdefault_workflow_export_format
(thanks to @nsoranzo). Pull Request 7748Report a couple common errors in dataset/job report. Pull Request 7755
Add singularity to valid types, allow customization of test history name (thanks to @mvdbeek). Pull Request 7760
Update parameter_input type when changing parameter type (thanks to @mvdbeek). Pull Request 7780
Don’t clean up jobs when running tests if $GALAXY_TEST_NO_CLEANUP is set Pull Request 7798
Add option to wait for the database to become available (thanks to @ic4f). Pull Request 7827
Remove recursion from
expand_nested_tokens()
(thanks to @nsoranzo). Pull Request 7834Allow composite upload if all non-optional files are selected (thanks to @mvdbeek). Pull Request 7872
Cleanup integration test configuration code. Pull Request 7874
Add “Reset” button to composite upload interface (thanks to @mvdbeek). Pull Request 7875
Add local namespaced resolver to default container resolvers (thanks to @mvdbeek). Pull Request 7896
Use node-watch instead of fs.watch to watch for db changes (thanks to @mvdbeek). Pull Request 7967
Remove reset handler from ruler input element. Pull Request 6321
Declutter the history ‘cog’ menu. Pull Request 6437
Remove deprecated OpenID features. Pull Request 7028, Pull Request 7395
Restores OpenID post authentication protocols. Pull Request 7676
Replace custom UI colors with equivalent theme colors, consolidate color handling. Pull Request 7203
Modernize library toolbar client code. Pull Request 7234
Large refactoring of model migrations (thanks to @nsoranzo). Pull Request 7621, Pull Request 7248, Pull Request 7737, Pull Request 7695
Implement a general purpose tagging component in the Galaxy client code. Pull Request 7270
Define doctype method on XMLParser target (thanks to @mvdbeek). Pull Request 7303
Refactor
galaxy.util.handlers
->galaxy.web.stack.handlers
. Pull Request 7339Move
create_history_template
out ofgalaxy.util
. Pull Request 7522Refactor
galaxy.web.form_builder
intogalaxy.util.form_builder
. Pull Request 7529Drop unused install keyword and load TS workflows with utf-8 encoding (thanks to @mvdbeek). Pull Request 7423
Remove biostar integrations. (with help from @nsoranzo). Pull Request 7443, Pull Request 7510
Refactor TagManager (back) to TagHandler. Pull Request 7530
Refactor
output_collect.py
toward a database session-less modality. Pull Request 7541Drop D3 from publicly provided libs Pull Request 7542
Fix dependency cycle between
galaxy.security
andgalaxy.model
. Pull Request 7554Refactor
galaxy.dataset_collections
intogalaxy.model.dataset_collections
. Pull Request 7588Toastr debowerization and refactoring. Pull Request 7640
Tweak
popup-menu.js
error handling. Pull Request 7643Update Conda version that new Galaxies will install Pull Request 8048
Fixes¶
Explicitly specify system user under which Kubernetes jobs should run. Pull Request 8103
Ensure Kubernetes job querries filter the same namespace as defined in the job destination. Pull Request 8092
Fix client styleguide asset handling. Pull Request 7664
Handle subworkflows in view workflow mako (thanks to @mvdbeek). Pull Request 7276
Fix removing tags from a dataset previously only the first tag could be removed (thanks to @gtrack). Pull Request 7674, Pull Request 7680
Fix displaying and editing SelectTagParameters in workflow editor (thanks to @mvdbeek). Pull Request 7534
Fix workflow output rectification. Pull Request 7101
Interactive Environment Fixes Pull Request 7917
Make job script actually return tool exit code (thanks to @bernt-matthias). Pull Request 7147
Fix client galaxy object instance access in visualizations. Pull Request 7198
Assorted component bugfixes. Pull Request 7200
Update IE proxy dependencies. Pull Request 7208
Cleanup code for univa job runner (thanks to @bernt-matthias). Pull Request 7210
Verify and update .venv’s node version. Pull Request 7220
Update
use_interactive
default in docs (thanks to @nsoranzo). Pull Request 7221Fix hotdata method access. Pull Request 7256
Fix saving imported subworkflows (thanks to @mvdbeek). Pull Request 7262
Fix “occured” typo everywhere (thanks to @nsoranzo). Pull Request 7266
Fix flakey history import metadata test (thanks to @mvdbeek). Pull Request 7279
Do not skip the client build in dockerized selenium tests (thanks to @nsoranzo). Pull Request 7280
Fixes for the cluster documentation (thanks to @nsoranzo). Pull Request 7281
Fix
ObjectNotFound
exception when exporting an history (thanks to @abretaud). Pull Request 7286Do not remove tools from other installed revisions when uninstalling TS repo (thanks to @nsoranzo). Pull Request 7300
Remove unused keyword in resend email helper. Pull Request 7315
Fix popupmenu creation. Pull Request 7318
Fix trackster toolbox filter for logged-in users (thanks to @nsoranzo). Pull Request 7319
Remove overlapping tooltip from dropdown button in library toolbar. Pull Request 7321
UI fixes for libraries. Pull Request 7337
Fix
test_import_metadata_regeneration
API test (thanks to @nsoranzo). Pull Request 7340Possible fix for fasta file never getting filesize (thanks to @Slugger70). Pull Request 7374
Fix upload button style. Pull Request 7381
Fix link doc syntax (thanks to @galaxyproject). Pull Request 7388
Update application documentation (thanks to @nsoranzo). Pull Request 7391
Fix pie chart and portlet height in flexboxes. Pull Request 7396
Fix
LocalShellRunner
(thanks to @mvdbeek). Pull Request 7438Use a lock on cleanup, expire_tool and cache_tool (thanks to @mvdbeek). Pull Request 7446
Fix loading workflows with steps without default label (thanks to @mvdbeek). Pull Request 7448
Remove broken configuration option tool_submission_burst (thanks to @mvdbeek). Pull Request 7449
Restore
get_filename
togalaxy.tools.verify:verify()
Pull Request 7452Fix documentation for statsd and uwsgi (thanks to @abretaud). Pull Request 7453
Fix hidden parameter use in workflows (thanks to @mvdbeek). Pull Request 7458
Fix syntax of XSD tool schema. Pull Request 7462
Fix workflow building typo (thanks to @mvdbeek). Pull Request 7472
Correct
virtualenv
download with nowget
/curl
(thanks to @hmenager). Pull Request 7476Use a relative
output.publicPath
to avoid 404 errors when serving with a url prefix (thanks to @abretaud). Pull Request 7481Restrict loading of JSON files on the server via the workflow API to Galaxy admins (thanks to @nsoranzo). Pull Request 7499
Fix warning message formatting in sharing controller (thanks to @mvdbeek). Pull Request 7504
Make sure
temp_output_dir
path is absolute (thanks to @nsoranzo). Pull Request 7517Create directory before copying file there (thanks to @pvanheus). Pull Request 7519
Fix routing when serving Galaxy at a prefix. Pull Request 7523
Small object store fixes. Pull Request 7536
Fix entering workflow parameter in workflow run form (thanks to @mvdbeek). Pull Request 7543
Extend reload test case logging (thanks to @mvdbeek). Pull Request 7547
Correct db-self handler assignment method (thanks to @hexylena). Pull Request 7561
Fix database config doctests when env vars are in use for dburi Pull Request 7562
Fix help warnings style. Pull Request 7566
Fix to run
bootstrap_history.py
inside Galaxy’s virtualenv (thanks to @nsoranzo). Pull Request 7584Update cloud imports to adhere with cloudbridge interface changes. Pull Request 7586
Fix RStudio GIE (thanks to @hexylena). Pull Request 7590, Pull Request 7925
Fix styleguide. Pull Request 7602
Fix history options menu href navigation Pull Request 7612
Minor cli and metadata fixes (thanks to @mvdbeek). Pull Request 7614
Improve string escaping and changeset validation on toolshed. Pull Request 7616
Delay workflow step execution for discovered & mapped-over input (thanks to @mvdbeek). Pull Request 7633
Fix float to int casting (thanks to @mvdbeek). Pull Request 7634
Adjust
test_run_with_numeric_input_connection
to extra line (thanks to @mvdbeek). Pull Request 7645Fix incorrect LDDAs being used as collection members. Pull Request 7646
Fix GenomeSpace tools. Pull Request 7647, Pull Request 7697
Bugfix for input selection with tag representation in
ui-select-default
. Pull Request 7658Drop now unused import endpoint from workflow controller. Pull Request 7660
Fix for
trans.redirect
not setting cookies/headers. Pull Request 7663Fix shutdown for Pulsar MQ Runner. Pull Request 7667
Fix “Run workflow” jumps when clicking (thanks to @gtrack). Pull Request 7675
Detect errors using exit code for sort tool (thanks to @mvdbeek). Pull Request 7679
Fix
format_source
for implicit conversion inputs andfasta.gz
upload (thanks to @mvdbeek). Pull Request 7682Plugin static staging fix. Pull Request 7689
Fix side panel styling, adjust appearance in reports. Pull Request 7690
Patch for metadata setting of minimal BIOM1 files (thanks to @bebatut). Pull Request 7696
Only check for exit code on actual sort command (thanks to @mvdbeek). Pull Request 7699
Update
pytest-posgresql
to 1.4.0, which removes a hard dependency onpsycopg2
(thanks to @mvdbeek). Pull Request 7703Fix runner param validation in the DRMAA runner. Pull Request 7709
Restrict workflow invocation index to current user (thanks to @mvdbeek). Pull Request 7711
Copy
tools_by_id
before collecting dependency status (thanks to @mvdbeek). Pull Request 7713Fix uWSGI startup with separate ini file under Python 3 (thanks to @nsoranzo). Pull Request 7716
Fix (re)starting Galaxy using paste,
GALAXY_RUN_ALL=1
and--wait
under macOS (thanks to @nsoranzo). Pull Request 7722Fix check on links in
CompressedFile.safemembers()
(thanks to @nsoranzo). Pull Request 7723Unpause dependent jobs when resuming jobs (thanks to @mvdbeek). Pull Request 7724
Commented-out cloudbridge requirement for the cloud/send tool. Pull Request 7727
Fix comments (thanks to @nsoranzo). Pull Request 7738
Upgrade to latest Pulsar release for various remote job running fixes. Pull Request 7744, Pull Request 7865
Fix automatic user registration. Pull Request 7749
Sanitize HTML in messages using
galaxy.util.sanitize_html
. Pull Request 7751Fix Kubernetes integration tests for Docker on Mac. Pull Request 7754
Fix BootstrapVue component specification in Citations. Pull Request 7778
Symlink two more images that are accessed via non-webpack’d applications. Pull Request 7779
Make
url_get
return unicode (thanks to @mvdbeek). Pull Request 7782Disable flexible spreading of radio buttons by default. Pull Request 7788
Fix default value handling of color parameter. Pull Request 7475
Fix various Python deprecations (thanks to @nsoranzo). Pull Request 7800
Return HTTP 400 for GET /api/datasets/nonexistent_id (thanks to @nsoranzo). Pull Request 7806
Encode email messages using UTF-8 (thanks to @nsoranzo). Pull Request 7812
Fix nested macro/token expansion on Python 3 (thanks to @mvdbeek). Pull Request 7823
Possible fix for WSGI process issue #7758 (thanks to @tmcgowan). Pull Request 7824
Fix
InputValueWrapper
gt/ge/lt/le comparisons (thanks to @mvdbeek). Pull Request 7826Fix trackster issue with constraining (
overflow:non-visible
) containers. Pull Request 7845Improve upload accessibility. Pull Request 7848
Adjust appearance of user creation form in admin panel. Pull Request 7851
Use just the env name when checking
CONDA_DEFAULT_ENV
(thanks to @mvdbeek). Pull Request 7853Fix workflow extraction for jobs whose JobToDatasetOutputAssociation references a discovered dataset (thanks to @mvdbeek). Pull Request 7855
Fix flag for library dataset option in data selector. Pull Request 7859
Fix bug preventing handler runner plugin handling. Pull Request 7870
Fix click targeting for quota usage details Pull Request 7877
Allow typing e in float param field. Pull Request 7880
Update Cheetah dependency, fixes
AssertionError
(thanks to @mvdbeek). Pull Request 7887Fix application of history default permissions to anonymous histories carried over upon login. Pull Request 7904
Fix multi-history copying of collections. Pull Request 7906
Remove GFF headers during conversion and test fix (thanks to @mvdbeek). Pull Request 7916
Fix community tags showing JSON file. Pull Request 7923
Fix upload of gzipped VCF files (thanks to @nsoranzo). Pull Request 7933
Fix documentation building (thanks to @nsoranzo). Pull Request 7934
Listen to history changes in tool form until job has been submitted. Pull Request 7943
Fixed wrong example for
amqp_ack_republish_time
injob_conf.xml.sample_advanced
(thanks to @AndreasSko). Pull Request 7983Backport various upload encoding fixes from #7995 (thanks to @mvdbeek). Pull Request 8000, Pull Request 8004
Disable create user button while request is being processed Pull Request 8029
Fix multipanel history search Pull Request 8085
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Thanks for using Galaxy!