This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

Source code for galaxy.files.unittest_utils

import os
import tempfile
from typing import Tuple

from galaxy.files import ConfiguredFileSources, ConfiguredFileSourcesConfig

[docs]class TestConfiguredFileSources(ConfiguredFileSources):
[docs] def __init__(self, file_sources_config: ConfiguredFileSourcesConfig, conf_dict: dict, test_root: str): super().__init__(file_sources_config, conf_dict=conf_dict) self.test_root = test_root
[docs]def setup_root(): tmp = os.path.realpath(tempfile.mkdtemp()) root = os.path.join(tmp, "root") os.mkdir(root) return tmp, root
[docs]def write_file_fixtures(tmp: str, root: str) -> Tuple[str, str]: if not os.path.exists(root): os.mkdir(root) os.symlink(os.path.join(tmp, "b"), os.path.join(root, "unsafe")) with open(os.path.join(root, "a"), "w") as f: f.write("a\n") with open(os.path.join(tmp, "b"), "w") as f: f.write("b\n") subdir1 = os.path.join(root, "subdir1") os.mkdir(subdir1) with open(os.path.join(subdir1, "c"), "w") as f: f.write("c\n") subdir2 = os.path.join(subdir1, "subdir2") os.mkdir(subdir2) with open(os.path.join(subdir2, "d"), "w") as f: f.write("d\n") os.symlink(subdir1, os.path.join(root, "unsafe_dir")) return tmp, root