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Source code for galaxy.tool_shed.galaxy_install.migrate.versions.0006_tools
""" The following tools have been eliminated from the distribution: FASTQ to BAM, SAM to FASTQ, BAM Index Statistics, Estimate Library Complexity, Insertion size metrics for PAIRED data, SAM/BAM Hybrid Selection Metrics, bam/sam Cleaning, Add or Replace Groups, Replace SAM/BAM Header, Paired Read Mate Fixer, Mark Duplicate reads, SAM/BAM Alignment Summary Metrics, SAM/BAM GC Bias Metrics, and Reorder SAM/BAM. The tools are now available in the repository named picard from the main Galaxy tool shed at http://toolshed.g2.bx.psu.edu, and will be installed into your local Galaxy instance at the location discussed above by running the following command. """[docs]def upgrade(migrate_engine): print(__doc__)[docs]def downgrade(migrate_engine): pass