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Source code for galaxy.model.migrate.versions.0119_job_metrics
"""
Migration script for job metric plugins.
"""
from __future__ import print_function
import logging
from sqlalchemy import (
Column,
ForeignKey,
Integer,
MetaData,
Numeric,
Table,
Unicode
)
from galaxy.model.migrate.versions.util import (
create_table,
drop_table
)
log = logging.getLogger(__name__)
metadata = MetaData()
TEXT_METRIC_MAX_LENGTH = 1023
JobMetricText_table = Table(
"job_metric_text",
metadata,
Column("id", Integer, primary_key=True),
Column("job_id", Integer, ForeignKey("job.id"), index=True),
Column("plugin", Unicode(255), ),
Column("metric_name", Unicode(255), ),
Column("metric_value", Unicode(TEXT_METRIC_MAX_LENGTH), ),
)
TaskMetricText_table = Table(
"task_metric_text",
metadata,
Column("id", Integer, primary_key=True),
Column("task_id", Integer, ForeignKey("task.id"), index=True),
Column("plugin", Unicode(255), ),
Column("metric_name", Unicode(255), ),
Column("metric_value", Unicode(TEXT_METRIC_MAX_LENGTH), ),
)
JobMetricNumeric_table = Table(
"job_metric_numeric",
metadata,
Column("id", Integer, primary_key=True),
Column("job_id", Integer, ForeignKey("job.id"), index=True),
Column("plugin", Unicode(255), ),
Column("metric_name", Unicode(255), ),
Column("metric_value", Numeric(22, 7), ),
)
TaskMetricNumeric_table = Table(
"task_metric_numeric",
metadata,
Column("id", Integer, primary_key=True),
Column("task_id", Integer, ForeignKey("task.id"), index=True),
Column("plugin", Unicode(255), ),
Column("metric_name", Unicode(255), ),
Column("metric_value", Numeric(22, 7), ),
)
TABLES = [
JobMetricText_table,
TaskMetricText_table,
JobMetricNumeric_table,
TaskMetricNumeric_table,
]
[docs]def upgrade(migrate_engine):
print(__doc__)
metadata.bind = migrate_engine
metadata.reflect()
for table in TABLES:
create_table(table)
[docs]def downgrade(migrate_engine):
metadata.bind = migrate_engine
metadata.reflect()
for table in TABLES:
drop_table(table)