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Source code for galaxy_test.selenium.test_history_panel_collections
import time
from galaxy.selenium.navigates_galaxy import WAIT_TYPES
from galaxy_test.base.api_asserts import assert_status_code_is
from galaxy_test.base.populators import flakey
from .framework import (
retry_assertion_during_transitions,
selenium_test,
SeleniumTestCase,
)
[docs]class TestHistoryPanelCollections(SeleniumTestCase):
ensure_registered = True
[docs] @selenium_test
def test_mapping_collection_states_terminal(self):
history_id = self.current_history_id()
input_collection, failed_collection = self._generate_partially_failed_collection_with_input()
input_hid = input_collection["hid"]
failed_hid = failed_collection["hid"]
self.home()
ok_inputs = {
"input1": {"batch": True, "values": [{"src": "hdca", "id": input_collection["id"]}]},
"sleep_time": 0,
}
ok_response = self.dataset_populator.run_tool(
"cat_data_and_sleep",
ok_inputs,
history_id,
)
ok_hid = ok_response["implicit_collections"][0]["hid"]
self.history_panel_wait_for_hid_state(input_hid, "ok")
self.history_panel_wait_for_hid_state(failed_hid, "error")
self.history_panel_wait_for_hid_state(ok_hid, "ok")
self.screenshot("history_panel_collections_state_mapping_terminal")
[docs] @selenium_test
@flakey # Some times a Paste web thread will stall when jobs are running.
def test_mapping_collection_states_running(self):
history_id = self.current_history_id()
input_collection = self.dataset_collection_populator.create_list_in_history(
history_id, contents=["0", "1"]
).json()
running_inputs = {
"input1": {"batch": True, "values": [{"src": "hdca", "id": input_collection["id"]}]},
"sleep_time": 60,
}
running_response = self.dataset_populator.run_tool_raw(
"cat_data_and_sleep",
running_inputs,
history_id,
)
try:
assert_status_code_is(running_response, 200)
running_hid = running_response.json()["implicit_collections"][0]["hid"]
# sleep really shouldn't be needed :(
time.sleep(1)
self.home()
self.history_panel_wait_for_hid_state(running_hid, "running", 1)
self.screenshot("history_panel_collections_state_mapping_running")
finally:
for job in running_response.json()["jobs"]:
self.dataset_populator.cancel_job(job["id"])
[docs] @selenium_test
def test_output_collection_states_terminal(self):
history_id = self.current_history_id()
input_collection = self.dataset_collection_populator.create_list_in_history(
history_id, contents=["0", "1", "0", "1"]
).json()["outputs"][0]
ok_inputs = {"input1": {"src": "hdca", "id": input_collection["id"]}}
ok_response = self.dataset_populator.run_tool("collection_creates_list", ok_inputs, history_id)
ok_hid = ok_response["output_collections"][0]["hid"]
assert ok_hid > 0
failed_response = self.dataset_populator.run_tool(
"collection_creates_dynamic_nested_fail",
{},
history_id,
)
failed_hid = failed_response["output_collections"][0]["hid"]
assert failed_hid > 0
# sleep really shouldn't be needed :(
time.sleep(1)
self.home()
self.history_panel_wait_for_hid_state(ok_hid, "ok")
self.history_panel_wait_for_hid_state(failed_hid, "error")
self.screenshot("history_panel_collections_state_terminal")
[docs] @selenium_test
@flakey # Some times a Paste web thread will stall when jobs are running.
def test_output_collection_states_running(self):
history_id = self.current_history_id()
running_inputs = {
"sleep_time": 180,
}
payload = self.dataset_populator.run_tool(
"collection_creates_dynamic_nested",
running_inputs,
history_id,
)
assert payload["output_collections"]
assert payload["jobs"]
assert len(payload["jobs"]) > 0
assert len(["output_collections"]) > 0
running_hid = payload["output_collections"][0]["hid"]
assert running_hid
try:
self.history_panel_wait_for_hid_state(running_hid, "running")
self.screenshot("history_panel_collections_state_running")
finally:
for job in payload["jobs"]:
self.dataset_populator.cancel_job(job["id"])
[docs] @selenium_test
def test_collection_job_details(self):
ok_collection_hid, failed_collection_hid = self._generate_ok_and_failed_collections()
ok_collection_element = self.history_panel_wait_for_hid_state(ok_collection_hid, "ok")
failed_collection_element = self.history_panel_wait_for_hid_state(failed_collection_hid, "error")
ok_collection_element.collection_job_details_button.wait_for_and_click()
self.components.job_details.galaxy_tool_with_id(tool_id="collection_creates_list").wait_for_visible()
tool_exit_code_component = self.components.job_details.tool_exit_code.wait_for_visible()
self.screenshot("history_panel_collections_job_details_ok")
assert int(tool_exit_code_component.text) == 0
failed_collection_element.collection_job_details_button.wait_for_and_click()
self.components.job_details.galaxy_tool_with_id(tool_id="collection_creates_list_fail").wait_for_visible()
tool_exit_code_component = self.components.job_details.tool_exit_code.wait_for_visible()
self.screenshot("history_panel_collections_job_details_failed")
assert int(tool_exit_code_component.text) > 0
[docs] @selenium_test
def test_back_to_history_button(self):
input_collection = self._populated_paired_and_wait_for_it()
collection_hid = input_collection["hid"]
self.history_panel_wait_for_hid_state(collection_hid, "ok")
self.history_panel_expand_collection(collection_hid)
self._back_to_history()
self.history_panel_wait_for_hid_state(collection_hid, "ok")
def _back_to_history(self):
menu = self.history_element("collection breadcrumbs menu")
if not menu.is_absent:
menu.wait_for_and_click()
back = self.history_element("back to history")
back.wait_for_and_click()
self.sleep_for(WAIT_TYPES.UX_RENDER)
[docs] @selenium_test
def test_rename_collection(self):
input_collection = self._populated_paired_and_wait_for_it()
collection_hid = input_collection["hid"]
self.history_panel_expand_collection(collection_hid)
self.sleep_for(self.wait_types.UX_RENDER)
self.history_panel_wait_for_hid_state(collection_hid, "ok")
new_name = "My New Name"
self.history_panel_collection_rename(collection_hid, new_name, assert_old_name=input_collection["name"])
self.screenshot("history_panel_collection_view_rename")
@retry_assertion_during_transitions
def assert_name_changed():
title_element = self.history_panel_collection_name_element()
assert title_element.text == new_name
assert_name_changed()
[docs] @selenium_test
def test_name_tags_display(self):
# Test setting a name tag and viewing it from the outer history panel.
input_collection = self._populated_paired_and_wait_for_it()
collection_hid = input_collection["hid"]
self.history_panel_expand_collection(collection_hid)
self.sleep_for(self.wait_types.UX_RENDER)
self.history_panel_add_tags(["#moo"])
self.sleep_for(self.wait_types.HISTORY_POLL)
self.screenshot("history_panel_collection_view_add_nametag")
self._back_to_history()
self.sleep_for(self.wait_types.UX_RENDER)
self.history_panel_wait_for_hid_state(collection_hid, "ok")
nametags = self.history_panel_item_get_tags(collection_hid)
assert nametags == ["#moo"]
self.screenshot("history_panel_collection_with_nametag")
[docs] @selenium_test
def test_paired_display(self):
input_collection = self._populated_paired_and_wait_for_it()
collection_hid = input_collection["hid"]
collection_view = self.history_panel_expand_collection(collection_hid)
self.sleep_for(WAIT_TYPES.UX_TRANSITION)
dataset_elements = collection_view.list_items.all()
assert len(dataset_elements) == 2, dataset_elements
selector = ".title .name"
selector = ".content-title"
titles = [de.find_element(self.by.CSS_SELECTOR, selector).text for de in dataset_elements]
assert titles == ["forward", "reverse"]
self.screenshot("history_panel_collection_view_paired")
[docs] @selenium_test
@flakey # Fails only in Jenkins full suite - possibly due to #3782
def test_list_display(self):
input_collection, failed_collection = self._generate_partially_failed_collection_with_input()
failed_hid = failed_collection["hid"]
self.home()
self.history_panel_wait_for_hid_state(failed_hid, "error")
collection_view = self.history_panel_expand_collection(failed_hid)
@retry_assertion_during_transitions
def check_four_datasets_shown():
self.sleep_for(WAIT_TYPES.HISTORY_POLL)
dataset_elements = collection_view.list_items.all()
assert len(dataset_elements) == 4, dataset_elements
selector = ".title .name"
selector = ".content-title"
title_elements = [de.find_element(self.by.CSS_SELECTOR, selector).text for de in dataset_elements]
assert title_elements == ["data1", "data2", "data3", "data4"]
check_four_datasets_shown()
self.screenshot("history_panel_collection_view_list")
[docs] @selenium_test
def test_list_paired_display(self):
history_id = self.current_history_id()
collection = self.dataset_collection_populator.create_list_of_pairs_in_history(history_id).json()["outputs"][0]
collection_hid = collection["hid"]
self.home()
self.history_panel_wait_for_hid_state(collection_hid, "ok")
self.history_panel_expand_collection(collection_hid)
self.screenshot("history_panel_collection_view_list_paired")
[docs] @selenium_test
def test_list_list_display(self):
history_id = self.current_history_id()
collection = self.dataset_collection_populator.create_list_of_list_in_history(history_id).json()
collection_hid = collection["hid"]
self.home()
self.history_panel_wait_for_hid_state(collection_hid, "ok")
self.history_panel_expand_collection(collection_hid)
self.screenshot("history_panel_collection_view_list_list")
def _generate_partially_failed_collection_with_input(self):
history_id = self.current_history_id()
input_collection = self.dataset_collection_populator.create_list_in_history(
history_id, contents=["0", "1", "0", "1"], wait=True
).json()["outputs"][0]
failed_response = self.dataset_populator.run_exit_code_from_file(history_id, input_collection["id"])
failed_collection = failed_response["implicit_collections"][0]
return input_collection, failed_collection
def _populated_paired_and_wait_for_it(self):
history_id = self.current_history_id()
input_collection = self.dataset_collection_populator.create_pair_in_history(history_id, wait=True).json()[
"outputs"
][0]
collection_hid = input_collection["hid"]
self.history_panel_wait_for_hid_state(collection_hid, "ok")
return input_collection
def _generate_ok_and_failed_collections(self):
history_id = self.current_history_id()
fetch_response = self.dataset_collection_populator.create_list_in_history(
history_id, contents=["0", "1", "0", "1"]
).json()
hdca_id = self.dataset_collection_populator.wait_for_fetched_collection(fetch_response)["id"]
collection_input = {"input1": {"src": "hdca", "id": hdca_id}}
ok_response = self.dataset_populator.run_tool("collection_creates_list", collection_input, history_id)
failed_response = self.dataset_populator.run_tool("collection_creates_list_fail", collection_input, history_id)
ok_collection_hid = ok_response["output_collections"][0]["hid"]
failed_collection_hid = failed_response["output_collections"][0]["hid"]
return ok_collection_hid, failed_collection_hid