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Source code for galaxy.util.watcher
# TODO: this is largely copied from galaxy.tool_util.toolbox.galaxy and generalized, the tool-oriented watchers in that
# module should probably be updated to use this where possible
import logging
import os.path
import time
try:
from watchdog.events import FileSystemEventHandler
from watchdog.observers import Observer
from watchdog.observers.polling import PollingObserver
can_watch = True
except ImportError:
Observer = None
FileSystemEventHandler = object
PollingObserver = None
can_watch = False
from galaxy.util.hash_util import md5_hash_file
log = logging.getLogger(__name__)
[docs]def get_observer_class(config_name, config_value, default, monitor_what_str):
""" """
config_value = config_value or default
config_value = str(config_value).lower()
if config_value in ("true", "yes", "on", "auto"):
expect_observer = True
observer_class = Observer
elif config_value == "polling":
expect_observer = True
observer_class = PollingObserver
elif config_value in ("false", "no", "off"):
expect_observer = False
observer_class = None
else:
message = f"Unrecognized value for {config_name} config option: {config_value}"
raise Exception(message)
if expect_observer and observer_class is None:
message = f"Watchdog library unavailable, cannot monitor {monitor_what_str}."
if config_value == "auto":
log.info(message)
else:
raise Exception(message)
return observer_class
[docs]def get_watcher(
config, config_name, default="False", monitor_what_str=None, watcher_class=None, event_handler_class=None, **kwargs
):
config_value = getattr(config, config_name, None)
observer_class = get_observer_class(config_name, config_value, default=default, monitor_what_str=monitor_what_str)
if observer_class is not None:
watcher_class = watcher_class or Watcher
event_handler_class = event_handler_class or EventHandler
return watcher_class(observer_class, event_handler_class, **kwargs)
else:
return NullWatcher()
[docs]class BaseWatcher:
[docs] def __init__(self, observer_class, event_handler_class, **kwargs):
self.observer = None
self.observer_class = observer_class
self.event_handler = event_handler_class(self)
self.monitored_dirs = {}
[docs] def start(self):
if self.observer is None:
self.observer = self.observer_class()
self.observer.start()
self.resume_watching()
[docs] def monitor(self, dir_path, recursive=False):
self.monitored_dirs[dir_path] = recursive
if self.observer is not None:
self.observer.schedule(self.event_handler, dir_path, recursive=recursive)
[docs] def resume_watching(self):
for dir_path, recursive in self.monitored_dirs.items():
self.monitor(dir_path, recursive)
[docs] def shutdown(self):
if self.observer is not None:
self.observer.stop()
self.observer.join()
self.observer = None
[docs]class Watcher(BaseWatcher):
[docs] def __init__(self, observer_class, event_handler_class, **kwargs):
super().__init__(observer_class, event_handler_class, **kwargs)
self.path_hash = {}
self.file_callbacks = {}
self.dir_callbacks = {}
self.ignore_extensions = {}
self.require_extensions = {}
self.event_handler = event_handler_class(self)
[docs] def watch_file(self, file_path, callback=None):
file_path = os.path.abspath(file_path)
dir_path = os.path.dirname(file_path)
if dir_path not in self.monitored_dirs:
if callback is not None:
self.file_callbacks[file_path] = callback
self.monitor(dir_path)
log.debug("Watching for changes to file: %s", file_path)
[docs] def watch_directory(
self, dir_path, callback=None, recursive=False, ignore_extensions=None, require_extensions=None
):
dir_path = os.path.abspath(dir_path)
if dir_path not in self.monitored_dirs:
if callback is not None:
self.dir_callbacks[dir_path] = callback
if ignore_extensions:
self.ignore_extensions[dir_path] = ignore_extensions
if require_extensions:
self.require_extensions[dir_path] = require_extensions
self.monitor(dir_path, recursive=recursive)
log.debug("Watching for changes in directory%s: %s", " (recursively)" if recursive else "", dir_path)
[docs]class EventHandler(FileSystemEventHandler):
def _extension_check(self, key, path):
required_extensions = self.watcher.require_extensions.get(key)
if required_extensions:
return any(filter(path.endswith, required_extensions))
return not any(filter(path.endswith, self.watcher.ignore_extensions.get(key, [])))
def _handle(self, event):
# modified events will only have src path, move events will
# have dest_path and src_path but we only care about dest. So
# look at dest if it exists else use src.
path = getattr(event, "dest_path", None) or event.src_path
path = os.path.abspath(path)
callback = self.watcher.file_callbacks.get(path)
if os.path.basename(path).startswith("."):
return
if callback:
ext_ok = self._extension_check(path, path)
else:
# reversed sort for getting the most specific dir first
for key in reversed(sorted(self.watcher.dir_callbacks.keys())):
if os.path.commonprefix([path, key]) == key:
callback = self.watcher.dir_callbacks[key]
ext_ok = self._extension_check(key, path)
break
if not callback or not ext_ok:
return
cur_hash = md5_hash_file(path)
if cur_hash:
if self.watcher.path_hash.get(path) == cur_hash:
return
else:
time.sleep(0.5)
if cur_hash != md5_hash_file(path):
# We're still modifying the file, it'll be picked up later
return
self.watcher.path_hash[path] = cur_hash
callback(path=path)