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Source code for tool_shed.webapp.model.migrate.versions.0019_add_skip_tool_test_table_and_test_install_error_column

"""
Migration script to add the skip_tool_test table and add the test_install_error column to the repository_metadata table.
"""

import datetime
import logging
import sys

from sqlalchemy import Boolean, Column, DateTime, ForeignKey, Integer, MetaData, Table, TEXT
from sqlalchemy.exc import NoSuchTableError

# Need our custom types, but don't import anything else from model
from galaxy.model.custom_types import TrimmedString

log = logging.getLogger(__name__)
log.setLevel(logging.DEBUG)
handler = logging.StreamHandler(sys.stdout)
format = "%(name)s %(levelname)s %(asctime)s %(message)s"
formatter = logging.Formatter(format)
handler.setFormatter(formatter)
log.addHandler(handler)

now = datetime.datetime.utcnow

metadata = MetaData()

SkipToolTest_table = Table("skip_tool_test", metadata,
                           Column("id", Integer, primary_key=True),
                           Column("create_time", DateTime, default=now),
                           Column("update_time", DateTime, default=now, onupdate=now),
                           Column("repository_metadata_id", Integer, ForeignKey("repository_metadata.id"), index=True),
                           Column("initial_changeset_revision", TrimmedString(255), index=True),
                           Column("comment", TEXT))


[docs]def upgrade(migrate_engine): print(__doc__) metadata.bind = migrate_engine metadata.reflect() # Initialize. if migrate_engine.name == 'mysql' or migrate_engine.name == 'sqlite': default_false = "0" elif migrate_engine.name in ['postgresql', 'postgres']: default_false = "false" try: RepositoryMetadata_table = Table("repository_metadata", metadata, autoload=True) except NoSuchTableError: RepositoryMetadata_table = None log.debug("Failed loading table repository_metadata.") if RepositoryMetadata_table is not None: # Create the test_install_error column. c = Column("test_install_error", Boolean, default=False, index=True) try: c.create(RepositoryMetadata_table, index_name="ix_repository_metadata_ttie") assert c is RepositoryMetadata_table.c.test_install_error migrate_engine.execute(f"UPDATE repository_metadata SET test_install_error={default_false}") except Exception: log.exception("Adding test_install_error column to the repository_metadata table failed.") # Create skip_tool_test table. try: SkipToolTest_table.create() except Exception: log.exception("Creating the skip_tool_test table failed.")
[docs]def downgrade(migrate_engine): metadata.bind = migrate_engine metadata.reflect() # Drop the skip_tool_test table. try: SkipToolTest_table.drop() except Exception: log.exception("Dropping the skip_tool_test table failed.") # Drop test_install_error column from the repository_metadata table. RepositoryMetadata_table = Table("repository_metadata", metadata, autoload=True) try: RepositoryMetadata_table.c.test_install_error.drop() except Exception: log.exception("Dropping column test_install_error from the repository_metadata table failed.")