Warning

This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.

galaxy.webapps.reports package

The Galaxy Reports application.

galaxy.webapps.reports.url_for(*args, **kwargs) → str

Tries to resolve the URL using the routes module.

This only works in a WSGI app so a deprecation message is returned when running an ASGI app.

galaxy.webapps.reports.expose(func)[source]

Decorator: mark a function as ‘exposed’ and thus web accessible

Submodules

galaxy.webapps.reports.app module

class galaxy.webapps.reports.app.UniverseApplication(**kwargs)[source]

Bases: galaxy.structured_app.BasicApp

Encapsulates the state of a Universe application

__init__(**kwargs)[source]
Parameters

container – Optional container if provided the existing definitions will be copied

:param log_undefined_deps indicates if a log message should be emmited when an undefined dep is loaded

name: str
config: Any
application_stack: galaxy.web_stack.ApplicationStack
model: galaxy.model.base.SharedModelMapping
security: galaxy.security.idencoding.IdEncodingHelper
shutdown()[source]
auth_manager: galaxy.auth.AuthManager
toolbox: Any
security_agent: Any
quota_agent: galaxy.quota.QuotaAgent
datatypes_registry: galaxy.datatypes.registry.Registry

galaxy.webapps.reports.buildapp module

Provides factory methods to assemble the Galaxy web application

class galaxy.webapps.reports.buildapp.ReportsWebApplication(galaxy_app, session_cookie='galaxysession', name=None)[source]

Bases: galaxy.webapps.base.webapp.WebApplication

galaxy.webapps.reports.buildapp.add_ui_controllers(webapp, app)[source]

Search for controllers in the ‘galaxy.webapps.controllers’ module and add them to the webapp.

galaxy.webapps.reports.buildapp.app_factory(global_conf, load_app_kwds=None, **kwargs)[source]

Return a wsgi application serving the root object

galaxy.webapps.reports.buildapp.wrap_in_middleware(app, global_conf, application_stack, **local_conf)[source]

Based on the configuration wrap app in a set of common and useful middleware.

galaxy.webapps.reports.buildapp.wrap_in_static(app, global_conf, **local_conf)[source]
galaxy.webapps.reports.buildapp.uwsgi_app()[source]

galaxy.webapps.reports.config module

Universe configuration builder.

galaxy.webapps.reports.config.resolve_path(path, root)[source]

If ‘path’ is relative make absolute by prepending ‘root’

exception galaxy.webapps.reports.config.ConfigurationError[source]

Bases: Exception

class galaxy.webapps.reports.config.Configuration(**kwargs)[source]

Bases: object

__init__(**kwargs)[source]

Initialize self. See help(type(self)) for accurate signature.

get(key, default=None)[source]
check()[source]
property sentry_dsn_public

Sentry URL with private key removed for use in client side scripts, sentry server will need to be configured to accept events

galaxy.webapps.reports.config.get_database_engine_options(kwargs)[source]

Allow options for the SQLAlchemy database engine to be passed by using the prefix “database_engine_option”.