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galaxy.webapps.reports package

The Galaxy Reports application.

galaxy.webapps.reports.url_for(*args, **kwargs) → str

Tries to resolve the URL using the routes module.

This only works in a WSGI app so a deprecation message is returned when running an ASGI app.

galaxy.webapps.reports.expose(func)

Decorator: mark a function as ‘exposed’ and thus web accessible

Subpackages

• galaxy.webapps.reports.controllers package
  • Submodules
  • galaxy.webapps.reports.controllers.history module
  • galaxy.webapps.reports.controllers.home module
  • galaxy.webapps.reports.controllers.jobs module
  • galaxy.webapps.reports.controllers.query module
  • galaxy.webapps.reports.controllers.root module
  • galaxy.webapps.reports.controllers.system module
  • galaxy.webapps.reports.controllers.tools module
  • galaxy.webapps.reports.controllers.users module
  • galaxy.webapps.reports.controllers.workflows module

Submodules

galaxy.webapps.reports.app module

class galaxy.webapps.reports.app.UniverseApplication(**kwargs)

Bases: galaxy.structured_app.BasicApp

Encapsulates the state of a Universe application

__init__(**kwargs)

Parameters

container – Optional container if provided the existing definitions will be copied

:param log_undefined_deps indicates if a log message should be emmited when an undefined dep is loaded

name: str

config: Any

application_stack: galaxy.web_stack.ApplicationStack

model: galaxy.model.base.SharedModelMapping

security: galaxy.security.idencoding.IdEncodingHelper

shutdown()

auth_manager: galaxy.auth.AuthManager

toolbox: Any

security_agent: Any

quota_agent: galaxy.quota.QuotaAgent

datatypes_registry: galaxy.datatypes.registry.Registry

galaxy.webapps.reports.buildapp module

Provides factory methods to assemble the Galaxy web application

class galaxy.webapps.reports.buildapp.ReportsWebApplication(galaxy_app, session_cookie='galaxysession', name=None)

Bases: galaxy.webapps.base.webapp.WebApplication

galaxy.webapps.reports.buildapp.add_ui_controllers(webapp, app)

Search for controllers in the ‘galaxy.webapps.controllers’ module and add them to the webapp.

galaxy.webapps.reports.buildapp.app_factory(global_conf, load_app_kwds=None, **kwargs)

Return a wsgi application serving the root object

galaxy.webapps.reports.buildapp.wrap_in_middleware(app, global_conf, application_stack, **local_conf)

Based on the configuration wrap app in a set of common and useful middleware.

galaxy.webapps.reports.buildapp.wrap_in_static(app, global_conf, **local_conf)

galaxy.webapps.reports.buildapp.uwsgi_app()

galaxy.webapps.reports.config module

Universe configuration builder.

galaxy.webapps.reports.config.resolve_path(path, root)

If ‘path’ is relative make absolute by prepending ‘root’

exception galaxy.webapps.reports.config.ConfigurationError

Bases: Exception

class galaxy.webapps.reports.config.Configuration(**kwargs)

Bases: object

__init__(**kwargs)

Initialize self. See help(type(self)) for accurate signature.

get(key, default=None)

check()

property sentry_dsn_public

Sentry URL with private key removed for use in client side scripts, sentry server will need to be configured to accept events

galaxy.webapps.reports.config.get_database_engine_options(kwargs)

Allow options for the SQLAlchemy database engine to be passed by using the prefix “database_engine_option”.