Warning
This document is for an old release of Galaxy. You can alternatively view this page in the latest release if it exists or view the top of the latest release's documentation.
galaxy.webapps.reports.controllers package¶
Galaxy reports controllers.
Submodules¶
galaxy.webapps.reports.controllers.history module¶
-
class
galaxy.webapps.reports.controllers.history.
History
(app)[source]¶ Bases:
galaxy.webapps.base.controller.BaseUIController
Class defining functions used by reports to make requests to get informations and fill templates before being displayed. The name of function must be the same as as the field “action” of the “href” dict, in .mako templates (templates/webapps/reports).
galaxy.webapps.reports.controllers.home module¶
-
class
galaxy.webapps.reports.controllers.home.
HomePage
(app)[source]¶ Bases:
galaxy.webapps.base.controller.BaseUIController
,galaxy.webapps.reports.controllers.query.ReportQueryBuilder
galaxy.webapps.reports.controllers.jobs module¶
-
galaxy.webapps.reports.controllers.jobs.
sorter
(default_sort_id, kwd)[source]¶ Initialize sorting variables
-
class
galaxy.webapps.reports.controllers.jobs.
SpecifiedDateListGrid
[source]¶ Bases:
galaxy.web.legacy_framework.grids.Grid
-
class
JobIdColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
StateColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
ToolColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
CreateTimeColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
UserColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
EmailColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
SpecifiedDateColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
use_async
= False¶
-
model_class
¶ alias of
galaxy.model.Job
-
title
= 'Jobs'¶
-
columns
: List[galaxy.web.legacy_framework.grids.GridColumn] = [<galaxy.webapps.reports.controllers.jobs.SpecifiedDateListGrid.JobIdColumn object>, <galaxy.webapps.reports.controllers.jobs.SpecifiedDateListGrid.StateColumn object>, <galaxy.webapps.reports.controllers.jobs.SpecifiedDateListGrid.ToolColumn object>, <galaxy.webapps.reports.controllers.jobs.SpecifiedDateListGrid.CreateTimeColumn object>, <galaxy.webapps.reports.controllers.jobs.SpecifiedDateListGrid.UserColumn object>, <galaxy.webapps.reports.controllers.jobs.SpecifiedDateListGrid.SpecifiedDateColumn object>, <galaxy.webapps.reports.controllers.jobs.SpecifiedDateListGrid.EmailColumn object>, <galaxy.web.legacy_framework.grids.StateColumn object>, <galaxy.web.legacy_framework.grids.MulticolFilterColumn object>]¶
-
num_rows_per_page
= 50¶
-
use_paging
= True¶
-
class
-
class
galaxy.webapps.reports.controllers.jobs.
Jobs
(app)[source]¶ Bases:
galaxy.webapps.base.controller.BaseUIController
,galaxy.webapps.reports.controllers.query.ReportQueryBuilder
Class contains functions for querying data requested by user via the webapp. It exposes the functions and responds to requests with the filled .mako templates.
-
specified_date_list_grid
= <galaxy.webapps.reports.controllers.jobs.SpecifiedDateListGrid object>¶
-
specified_month_all
(trans, **kwd)[source]¶ Queries the DB for all jobs in given month, defaults to current month.
-
per_month_in_error
(trans, **kwd)[source]¶ Queries the DB for user jobs in error. Filters out monitor jobs.
-
galaxy.webapps.reports.controllers.query module¶
Mixin to help build advanced queries for reports interface.
galaxy.webapps.reports.controllers.root module¶
galaxy.webapps.reports.controllers.system module¶
-
class
galaxy.webapps.reports.controllers.system.
System
(app)[source]¶ Bases:
galaxy.webapps.base.controller.BaseUIController
-
userless_histories
(trans, **kwd)[source]¶ The number of userless histories and associated datasets that have not been updated for the specified number of days.
-
deleted_histories
(trans, **kwd)[source]¶ The number of histories that were deleted more than the specified number of days ago, but have not yet been purged. Also included is the number of datasets associated with the histories.
-
galaxy.webapps.reports.controllers.tools module¶
-
class
galaxy.webapps.reports.controllers.tools.
Tools
(app)[source]¶ Bases:
galaxy.webapps.base.controller.BaseUIController
Class defining functions used by reports to make requests to get informations and fill templates before being displayed. The name of function must be the same as as the field “action” of the “href” dict, in .mako templates (templates/webapps/reports).
-
tools_and_job_state
(trans, **kwd)[source]¶ - fill tools_and_job_state.mako template with
the name of the tool
the number of jobs using this tool in state ‘ok’
the number of jobs using this tool in error
-
tools_and_job_state_per_month
(trans, **kwd)[source]¶ - fill tools_and_job_state_per_month.mako template with
the name of the tool
the number of jobs using this tool in state ‘ok’
the number of jobs using this tool in error
-
tool_execution_time
(trans, **kwd)[source]¶ - Fill the template tool_execution_time.mako with informations:
Tool name
Tool average execution time
last job execution time
min and max execution time
-
galaxy.webapps.reports.controllers.users module¶
-
class
galaxy.webapps.reports.controllers.users.
Users
(app)[source]¶ Bases:
galaxy.webapps.base.controller.BaseUIController
,galaxy.webapps.reports.controllers.query.ReportQueryBuilder
galaxy.webapps.reports.controllers.workflows module¶
-
class
galaxy.webapps.reports.controllers.workflows.
SpecifiedDateListGrid
[source]¶ Bases:
galaxy.web.legacy_framework.grids.Grid
-
class
WorkflowNameColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
CreateTimeColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
UserColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
EmailColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
class
SpecifiedDateColumn
(label, key=None, model_class=None, method=None, format=None, link=None, attach_popup=False, visible=True, nowrap=False, filterable=None, sortable=True, label_id_prefix=None, target=None)[source]¶
-
use_async
= False¶
-
model_class
¶ alias of
galaxy.model.StoredWorkflow
-
title
= 'Workflows'¶
-
columns
: List[galaxy.web.legacy_framework.grids.GridColumn] = [<galaxy.webapps.reports.controllers.workflows.SpecifiedDateListGrid.WorkflowNameColumn object>, <galaxy.webapps.reports.controllers.workflows.SpecifiedDateListGrid.CreateTimeColumn object>, <galaxy.webapps.reports.controllers.workflows.SpecifiedDateListGrid.UserColumn object>, <galaxy.webapps.reports.controllers.workflows.SpecifiedDateListGrid.SpecifiedDateColumn object>, <galaxy.webapps.reports.controllers.workflows.SpecifiedDateListGrid.EmailColumn object>, <galaxy.web.legacy_framework.grids.MulticolFilterColumn object>]¶
-
num_rows_per_page
= 50¶
-
use_paging
= True¶
-
class
-
class
galaxy.webapps.reports.controllers.workflows.
Workflows
(app)[source]¶ Bases:
galaxy.webapps.base.controller.BaseUIController
,galaxy.webapps.reports.controllers.query.ReportQueryBuilder
-
specified_date_list_grid
= <galaxy.webapps.reports.controllers.workflows.SpecifiedDateListGrid object>¶
-